| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 641,667 | Δ1 bp | coding (367/453 nt) | SAUSA300_RS03035 ← | membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 641,666 | 0 | C | . | 92.3% | 39.9 / ‑1.8 | 13 | coding (368/453 nt) | SAUSA300_RS03035 | membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (10/2); total (11/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 | |||||||||||
AACAAATATTTATAATCGTTTAAAAGATTTCACGAACCCAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCGCCTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTGAAATTTAATAAGACTAAATTTTTTGTAGCATCGTATGCTAAGCCACCA > NC_007793/641572‑641758 | aaCAAATATTTATAATCGTTTAAAAGATTTCACGAACCCAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATAGCGCCTGCa > 1:2644625/1‑100 (MQ=255) tAAAAGATTTCACGAACCCAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCaat < 1:3930664/100‑3 (MQ=255) cACGAACCCAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTattgattg > 1:5889637/1‑100 (MQ=255) ccAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACt > 1:3722719/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAATCTCTAGCATGGTATTGATTGCTGTACTg > 1:4364444/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTg > 1:1669217/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTg > 1:3049675/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTg > 1:3649883/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTg > 1:5400402/1‑100 (MQ=255) cAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTg > 1:5545466/1‑100 (MQ=255) gAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTGaa > 1:4230058/1‑100 (MQ=255) gccGAATAATAAACCTAATGCGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTGAAATTTAATAAGACTAAATTTTTTGTAg > 1:639782/3‑100 (MQ=255) cGATGGCG‑CTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTGAAATTTAATAAGACTAAATTTTTTGTAGCATCGTATGCTAAGccactg < 1:1413308/100‑3 (MQ=255) | AACAAATATTTATAATCGTTTAAAAGATTTCACGAACCCAGAAACAATTAATTTGGAAATTTGGTCGGCGAATAATAAACCTAATGCGATGGCGCCTGCAATAAGTGTAACCTCTAGCATGGTATTGATTGCTGTACTGAAATTTAATAAGACTAAATTTTTTGTAGCATCGTATGCTAAGCCACCA > NC_007793/641572‑641758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |