Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_007793 593,859 Δ1 bp coding (27/472 nt) SAUSA300_RS02840 → 30S ribosomal protein S7

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_007793593,8590T.100.0% 14202.9 / ‑4.8 3512coding (27/472 nt)SAUSA300_RS0284030S ribosomal protein S7
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base . (3461/48);  minor base A (1/0);  total (3464/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

Only 100 of 3517 total aligned reads displayed.

CTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACAAAGA  >  NC_007793/593764‑593956
                                                                                               |                                                                                                 
          aGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTACTAcc                                                                                    <  1:572849/100‑1 (MQ=255)
                           taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                   >  1:2044527/1‑100 (MQ=255)
                           taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                   >  1:4309980/1‑100 (MQ=255)
                           taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAAct                                                                   >  1:4067950/1‑100 (MQ=255)
                           taaacttaaaATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCAGAAct                                                                   >  1:1711251/1‑100 (MQ=255)
                                  aaaaTATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGtt                                                            >  1:3273683/1‑100 (MQ=255)
                                         ttAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACt                                                     >  1:4182476/1‑100 (MQ=255)
                                           aaTATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTaa                                                   >  1:556532/1‑100 (MQ=255)
                                             tataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGGCGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaat                                                 >  1:2218351/1‑100 (MQ=255)
                                              tcaaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatt                                                >  1:2153093/3‑100 (MQ=255)
                                              ctaAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatt                                                >  1:4994317/2‑100 (MQ=255)
                                              ataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatt                                                >  1:1216934/1‑100 (MQ=255)
                                              ataAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatt                                                >  1:4915921/1‑100 (MQ=255)
                                               taAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:1323470/1‑100 (MQ=255)
                                               taAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:3721442/1‑100 (MQ=255)
                                               taAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:2091215/1‑100 (MQ=255)
                                               cgaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:2690724/3‑100 (MQ=255)
                                               caaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:2745121/2‑100 (MQ=255)
                                               aaaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaatta                                               >  1:3532989/2‑100 (MQ=255)
                                                aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                              >  1:3164699/1‑100 (MQ=255)
                                                aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                              >  1:293957/1‑100 (MQ=255)
                                                aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                              >  1:1868971/1‑100 (MQ=255)
                                                aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                              >  1:5499335/1‑100 (MQ=255)
                                                aaggaaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaa                                              >  1:4360531/1‑100 (MQ=255)
                                                  gacaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaatt                                            >  1:4010125/4‑100 (MQ=255)
                                                  atcaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAaattaatt                                            >  1:5772027/4‑100 (MQ=255)
                                                   gcaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                           >  1:2852427/3‑100 (MQ=255)
                                                   cgaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                           >  1:2534253/3‑100 (MQ=255)
                                                   ataggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAattaatta                                           >  1:3656214/3‑100 (MQ=255)
                                                    taggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAAttaattaa                                          >  1:1355693/2‑100 (MQ=255)
                                                    aaggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAAttaattaa                                          >  1:1992413/1‑100 (MQ=255)
                                                     aggGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAAc                                         >  1:1406410/1‑100 (MQ=255)
                                                               tACATTATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAGATTAATTAACAAAATTATGt                               >  1:3590129/1‑100 (MQ=255)
                                                                 ctccaTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTa                             >  1:562094/5‑100 (MQ=255)
                                                                  cctATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAg                            >  1:2802912/3‑100 (MQ=255)
                                                                   gtATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                           >  1:5822677/2‑100 (MQ=255)
                                                                   gtATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGa                           >  1:935488/2‑100 (MQ=255)
                                                                    tATGCCTCGTAAAGGTTCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAggc                          >  1:1274063/1‑98 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAggt                          >  1:4640042/1‑98 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAggt                          >  1:2430701/1‑98 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAggc                          >  1:4690699/1‑98 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAggc                          >  1:6202007/1‑98 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGac                          >  1:4414686/1‑99 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                          >  1:2642438/1‑100 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                          >  1:785972/1‑100 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                          >  1:2323333/1‑100 (MQ=255)
                                                                    tATGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACCAAATTAATTAACAAAATTATGTTAGAt                          >  1:1570012/1‑100 (MQ=255)
                                                                    gaTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTACTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGATAGAt                          >  1:3424543/2‑100 (MQ=255)
                                                                    caTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAt                          >  1:3110723/2‑100 (MQ=255)
                                                                     ttGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:6239080/2‑100 (MQ=255)
                                                                     gtGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:1930593/2‑100 (MQ=255)
                                                                     aTGCCTCGTAGAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACGAAATTATGTTAGacg                         >  1:6134434/1‑98 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                         >  1:5441067/1‑98 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGacg                         >  1:5874491/1‑98 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGGTg                         >  1:322395/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAta                         >  1:1814594/1‑99 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:5216426/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:5034204/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:5092443/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:4463827/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:737852/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:5672250/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATg                         >  1:1466473/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTACATg                         >  1:4847339/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAAATg                         >  1:6029933/1‑100 (MQ=255)
                                                                     aTGCCTCGTAAAGGATCAGTACCTA‑‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                        >  1:4126609/1‑100 (MQ=255)
                                                                      ggCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATgg                        >  1:3955607/2‑100 (MQ=255)
                                                                      ggCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGACgg                        >  1:1520248/2‑100 (MQ=255)
                                                                       tccTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATCACGTCAGAtcgg                       >  1:4728218/2‑97 (MQ=255)
                                                                       gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGt                       >  1:2274460/1‑100 (MQ=255)
                                                                       gCCTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGAAGGt                       >  1:5152442/1‑100 (MQ=255)
                                                                       gCCTCGCAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATCAATTAACAAAATTATGTTAGATGGt                       >  1:3776907/1‑100 (MQ=255)
                                                                        ccTCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTa                      >  1:2988643/1‑100 (MQ=255)
                                                                          tCGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGCTGGTaag                    >  1:3321267/1‑99 (MQ=255)
                                                                           cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGGTGGTagat                   >  1:3472834/1‑97 (MQ=255)
                                                                           cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTagat                   >  1:3826573/1‑97 (MQ=255)
                                                                           cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTaaaa                   >  1:305779/1‑99 (MQ=255)
                                                                           cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                   >  1:4573810/1‑100 (MQ=255)
                                                                           cGTAAAGGATCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAAc                   >  1:4784535/1‑100 (MQ=255)
                                                                                   ctCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACa           >  1:100024/2‑100 (MQ=255)
                                                                                   aTCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGCAAAcagatcgga           >  1:1045326/1‑92 (MQ=255)
                                                                                    tCAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAg          >  1:1144063/1‑100 (MQ=255)
                                                                                     tggTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:5262469/3‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:684202/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:4258150/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:4520991/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:1646501/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:1765743/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:2483023/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:6081629/1‑100 (MQ=255)
                                                                                     cAGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGc         >  1:2372132/1‑100 (MQ=255)
                                                                                      tgTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGca        >  1:5925441/2‑100 (MQ=255)
                                                                                      aGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTGACAAAATTATGTTAGATGGTAAACGTGGagatcgg        >  1:3885789/1‑94 (MQ=255)
                                                                                      aGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGca        >  1:2583534/1‑100 (MQ=255)
                                                                                      aGTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGca        >  1:862048/1‑100 (MQ=255)
                                                                                       gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac       >  1:3366996/1‑100 (MQ=255)
                                                                                       gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac       >  1:5317658/1‑100 (MQ=255)
                                                                                       gTACCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGcac       >  1:1089493/1‑100 (MQ=255)
                                                                                         aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACaa     >  1:5984075/1‑100 (MQ=255)
                                                                                         aCCTAA‑AAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACaa     >  1:538752/1‑100 (MQ=255)
                                                                                               |                                                                                                 
CTAAGAATTTAGTTTTTAATTAAATCTTAAACTTAAAATATTTAATATAAGGAAGGGAGGATTTACATTATGCCTCGTAAAGGATCAGTACCTAATAAGAGACGTATTACCAGATCCAATTCATAACTCTAAGTTAGTAACTAAATTAATTAACAAAATTATGTTAGATGGTAAACGTGGAACAGCACAAAGA  >  NC_007793/593764‑593956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑