| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_007793 | 460,962 | Δ5 bp | coding (324‑328/678 nt) | SAUSA300_RS02185 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007793 | 460,962 | 0 | T | . | 100.0% | 38.5 / NA | 11 | coding (324/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (6/5); total (6/5) | |||||||||||
| * | NC_007793 | 460,963 | 0 | A | . | 100.0% | 38.5 / NA | 11 | coding (325/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/5); total (6/5) | |||||||||||
| * | NC_007793 | 460,964 | 0 | C | . | 100.0% | 38.5 / NA | 11 | coding (326/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (6/5); total (6/5) | |||||||||||
| * | NC_007793 | 460,965 | 0 | A | . | 100.0% | 38.5 / NA | 11 | coding (327/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/5); total (6/5) | |||||||||||
| * | NC_007793 | 460,966 | 0 | G | . | 100.0% | 38.5 / NA | 11 | coding (328/678 nt) | SAUSA300_RS02185 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (6/5); total (6/5) | |||||||||||
GGGAATGAAAAGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAATACAGCTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAATTTAATAATTACTA > NC_007793/460879‑461044 ||||| gggAATGAAAAGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTAtt > 1:926638/1‑100 (MQ=255) aTTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGtt < 1:2106304/100‑1 (MQ=255) tttGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGtttt < 1:4400947/100‑3 (MQ=255) ctGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCGATTGGTGGCATTACTAAAACAAACGGTTCaa > 1:3788663/2‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:5458396/1‑100 (MQ=255) aaTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTa > 1:905814/1‑100 (MQ=255) aTGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTaa < 1:4278547/100‑1 (MQ=255) tatatTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGt < 1:2288109/100‑1 (MQ=255) ttgttgTAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGAtcggaaga > 1:2156498/1‑93 (MQ=255) tgttgtAAGAGAAAATTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAAttt > 1:5992258/1‑100 (MQ=255) aaaaTTCTGATAGATCTGGTAA‑‑‑‑‑CTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAATTTAATAATTACTa < 1:1295697/100‑1 (MQ=255) ||||| GGGAATGAAAAGCAAAATTTTGGTGAAGATATTTCTAATGTAGATATATTTGTTGTAAGAGAAAATTCTGATAGATCTGGTAATACAGCTTCAATTGGTGGTATTACTAAAACAAACGGTTCAAATTATATTGATAAAGTAAAAGATGTAAATTTAATAATTACTA > NC_007793/460879‑461044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |