Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,482,2940TG39.4% 137.9 / 16.1 66Y879S (TAC→TCC) unknownhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (4/36);  new base G (26/0);  total (30/36)
Fisher's exact test for biased strand distribution p-value = 1.66e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TAGCAATAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGACCACCGAAATAACCATCATCGTAGCGGTTAAGATAGTTA  >  1/1482046‑1482542
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         
tAGCAATAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTaa                                                                                                                                                                                                                                                         <  1:267237/251‑1 (MQ=255)
tAGCAATAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTaa                                                                                                                                                                                                                                                         <  1:179643/251‑1 (MQ=255)
    aaTAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCAc                                                                                                                                                                                                                                                     <  1:305766/251‑1 (MQ=255)
      tAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATTTCCGTGGCTTTTTGCGGATGCCCG‑TCCT‑CGGTCGGGGAATCACCg                                                                                                                                                                                                                                                   >  1:397797/1‑251 (MQ=255)
         ttATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGagc                                                                                                                                                                                                                                                <  1:631189/251‑1 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATTTCCGTGACTTTTTTCGGGTGCCAG‑TCAT‑CGGTCGGGGAATCACCCAGCAACCCCGaaaca                                                                                                                                                                                                                                    >  1:371516/1‑248 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGGTGCCAG‑TCAT‑CGGTCGGGGAATCACCGAGCAGCCCCGAATCa                                                                                                                                                                                                                                    >  1:149636/1‑251 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGGTGCCAG‑TCAT‑CGGTCGGGGAATAACCGAGCAGCCCCGAATCa                                                                                                                                                                                                                                    >  1:417692/1‑251 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAAt                                                                                                                                                                                                                                      <  1:126749/249‑1 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATATTCGGGACTTTTTGCGGATGGCAG‑GCAT‑TGGGTGGGGGATCACCGAGGAGCCCCGAATCa                                                                                                                                                                                                                                    >  1:115888/1‑251 (MQ=255)
                     ggTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAAAATTTCCGGGACTTTTTTCGGTTGCCAG‑GCAT‑TGGTCGGGGAATTACCGCGCAGCCCCGaaaca                                                                                                                                                                                                                                    >  1:77650/1‑248 (MQ=255)
                      gTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATc                                                                                                                                                                                                                                     <  1:465784/249‑1 (MQ=255)
                          gAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATTTTCGTGACTTGTTTCGGGTTGCAG‑TCAT‑CGGTCGGGGAATCACCCGGCCGCCCCGAATCAATaaa                                                                                                                                                                                                                               >  1:631840/1‑249 (MQ=255)
                                  ggTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACt                                                                                                                                                                                                                        <  1:508656/250‑1 (MQ=255)
                                   gTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGGGGCTTTTTGCGGATGCCAG‑TCAT‑CGGTCGGGGAATCACCGAGCAGCCCCGAATCCATAGATTTAACTAg                                                                                                                                                                                                                      >  1:227705/1‑251 (MQ=255)
                                   gTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAAAATTTCCGTGACTTGTTGTGGGTGCCAG‑TTAT‑TGGTCGGGGAATTACCCAGCAAccccccatccataaaatttaataa                                                                                                                                                                                                                      >  1:624549/1‑231 (MQ=255)
                                           gTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCAc                                                                                                                                                                                                                                                     <  1:75784/212‑1 (MQ=255)
                                                      gcgcAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGAATTTTTGGGGGTGCCAG‑TCAT‑CGGGCGGGGAATCAACGAGCAGCCCCGAAACAATAGATTTAAATAGATTATCGCTATTTAGCaaa                                                                                                                                                                                                   >  1:582950/1‑250 (MQ=255)
                                                       cgcAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATTCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAAc                                                                                                                                                                                                   <  1:51553/250‑1 (MQ=255)
                                                       cgcAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAAc                                                                                                                                                                                                   <  1:295275/250‑1 (MQ=255)
                                                             gCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATTTTCGTGGCTTTTTTCGGGTGGCAGTTCA‑‑CGGGCGGGGAATCACCGGGCAGGCCCGCATCAAAAAATTTTACTAGAATATACCTATTTAGCAAATGTACaa                                                                                                                                                                                            >  1:589857/1‑251 (MQ=255)
                                                              cTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAAt                                                                                                                                                                                           <  1:263425/251‑1 (MQ=255)
                                                                  ccGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAAcc                                                                                                                                                                                       <  1:91150/251‑1 (MQ=255)
                                                                        aCCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTTCGGGTGCCAG‑GCAT‑CGGGCGGGGAATCAc                                                                                                                                                                                                                                                     >  1:59856/1‑183 (MQ=255)
                                                                        aCCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACAt                                                                                                                                                                                 <  1:170837/251‑1 (MQ=255)
                                                                         cccGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCCG‑GCAT‑CGGGCGGGGAATTAACGCGCAGGCCCGAATCCATAGATTTAATTAGATTATCGCTATTTAGCAAATGCACCAAAAACTTACAtt                                                                                                                                                                                >  1:229956/1‑251 (MQ=255)
                                                                             tgtTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTAc                                                                                                                                                                             <  1:145218/250‑1 (MQ=255)
                                                                                                      cctATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACAt                                                                                                                                                                                 <  1:157633/221‑1 (MQ=255)
                                                                                                       ctATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGGGACTTGTTGCGGATGCCAG‑TCAT‑CGGGCGGGGAATCACCGAGCAGCCCCGAATCAATAGATTTAAATAGATTATCGCTATTTAGCAAATGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAAt                                                                                                                                                    >  1:23358/1‑249 (MQ=255)
                                                                                                             gCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGGTGCCCG‑TCAT‑CGGGCGGGGAATCACCCAGCAGCCCCGAATCAATAGATTTTACTAGATTATCGCTATTTAGCAAATGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGt                                                                                                                                            >  1:473428/1‑251 (MQ=255)
                                                                                                             gCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATaa                                                                                                                                                                                         <  1:276095/206‑1 (MQ=255)
                                                                                                              ccTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGAAACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGtt                                                                                                                                           <  1:233716/251‑1 (MQ=255)
                                                                                                                    cGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCGT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAgcgc                                                                                                                                     <  1:224512/251‑1 (MQ=255)
                                                                                                                          gctataTCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGGAATATGTCCGTGGCTTGTTGCGGGTGCCAG‑TCAT‑CGGGCGGGGAATCACCCGGCAGCCCCGAATCAATAGAATTAACTAGATTATCGCTATTTTGCAACTGCACAATAAACCTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTTTAGTTAAGCGCaaaacg                                                                                                                               >  1:406400/3‑248 (MQ=255)
                                                                                                                          gTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTGCGTGGCTTTTTGCCGGTCCCAG‑CCAT‑CGGACGGGGAATCACCGAGCAGCCCCGAATCAAAAGaat                                                                                                                                                                                                                             >  1:306234/1‑155 (MQ=255)
                                                                                                                          gTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTTTTGCGGATGCCAG‑TCAT‑CGGTCGGGGAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTAACGCGCCGTTGACTGTAACTCAAAATCTTATAATTAAACGCaaaacg                                                                                                                               >  1:570484/1‑248 (MQ=255)
                                                                                                                          gTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAAt                                                                                                                                                                                           <  1:519327/191‑1 (MQ=255)
                                                                                                                          gTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGGGATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTTGCAACTGCACAATAACCTTACATTTACCCCGCCGGTTACTGTAACTCAAAATCTTATAGTTAAGCGCAAAgcg                                                                                                                               >  1:236936/1‑251 (MQ=255)
                                                                                                                          gTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCCTGACTTGTTTCGGGTGCCAG‑TCCT‑CGGGCGGGGAATCACCCAGCAGCCCCGAATCAATAGATTTTAATAGATTATCGCTATTTTGCAACCGCACAATAAACTTACATTTACCCCGCCGTTGACTGTAAATCAAAAACtttttattaaacgcaaaacg                                                                                                                               >  1:406394/1‑233 (MQ=255)
                                                                                                                               atCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATTTCCGTGACTTGTTTCGGATGCCCG‑TCCT‑CGGGCGGGGAATCACCGAGCAGCCCCGAAACAATAGATTTAACTAGATTATCGCCATTTTGCAACAGCACAATAAACTTACATTTACCGCCCCGCTGACTGTAAATCAAAAACTTATAATTAAGCGCAAACAGCCCaa                                                                                                                          >  1:312003/1‑251 (MQ=255)
                                                                                                                                 cccTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCAc                                                                                                                                                                                                                                                     <  1:274208/126‑1 (MQ=255)
                                                                                                                                          ccAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAAAATGTGCGTGACTTGTTTCGGATGCCAG‑CCAT‑CGGGCGGGGAATCACCCGGCAGCCCCGAAACAATAGATTTAAATAGAATTTTGCTATTTAGCAACTGCACAATAACCTTAAATTTAACGCGCCGCTGACTGTAACTCAAAATCTTATAGt                                                                                                                                            >  1:342351/1‑222 (MQ=255)
                                                                                                                                                  ttattaGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGGAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTTGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAAATCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCCGGGGTAACgg                                                                                                        >  1:497340/1‑250 (MQ=255)
                                                                                                                                                    attaGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACt                                                                                                                                                                                                                        <  1:362430/136‑1 (MQ=255)
                                                                                                                                                           aTACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACaa                                                                                                                                                                                            <  1:419226/157‑1 (MQ=255)
                                                                                                                                                           aTACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAAc                                                                                                                        <  1:248105/225‑1 (MQ=255)
                                                                                                                                                                aTCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATc                                                                                                                                                                                                                                     <  1:18218/111‑1 (MQ=255)
                                                                                                                                                                aTCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAAc                                                                                                                                                                                        <  1:380345/156‑1 (MQ=255)
                                                                                                                                                                       aCGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACt                                                                                 <  1:333873/251‑1 (MQ=255)
                                                                                                                                                                             aTCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGGCTTTTTGCGGGAGCCAG‑TCATCCGGT‑GGGGAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGAATATCCCTATTTTGCAACCGCCCAATAAACCTACATTTACCGCCCCGGTGACTGTAACTCAAAAACTTATAATTAAGCGCAAAGCGCCCCAACCCCCCAGGTGGAAAGGCAAAATCCCCGGTAAAGttaccaatccg                                                                            >  1:540284/1‑242 (MQ=255)
                                                                                                                                                                             aTCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGGTGCCAG‑TCAT‑CGGTCGGGGAATAACCGAGCCGCCCCGAATCAATAGATTTAAATAGATTATCGCTATTTAGCAACTGCACAATAAACCTACATTTACCGCGCCGCTGACTGTAACTCAAAATCTTTTAGTTTAGCGCAAAACGCCCAAACTCGCCCGGGGTAAAGGCAAAAT‑CCCCGGAAAGTTCACTAGTCgg                                                                           >  1:419334/1‑251 (MQ=255)
                                                                                                                                                                             aTCTTAAATCGGATGCTTGTGACTTGTGGCGGTAAAATGTCCGTGACTTGTTGCGGATGCCCG‑TCAT‑CGGTCGGGGAATCACCGCGCAGCCCCCCATCAATAGATTTAACTAGATTATCGCTTTTTAACAAATGCACAATAACCCTTCATTTACCGCCCCGTTGACTGTAACTCAAAAACTTATAGTTAAGCGCAAAGCGCCCAAACCCGCCCGGTGGAACGGCAAAAA‑CCCGGTAAAGGTCACTAGTCgg                                                                           >  1:78959/1‑251 (MQ=255)
                                                                                                                                                                                             ttGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGAt                                                           <  1:344803/251‑1 (MQ=255)
                                                                                                                                                                                                            gTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCAGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACgg                                             >  1:263478/1‑250 (MQ=255)
                                                                                                                                                                                                             tAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGc                                            <  1:313401/250‑1 (MQ=255)
                                                                                                                                                                                                             tAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGc                                            <  1:413630/250‑1 (MQ=255)
                                                                                                                                                                                                              aaTATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAg                                          >  1:319661/1‑251 (MQ=255)
                                                                                                                                                                                                                 atGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGacc                                       <  1:361610/251‑1 (MQ=255)
                                                                                                                                                                                                                   gTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAg                                                                                                                                             <  1:164277/148‑1 (MQ=255)
                                                                                                                                                                                                                   gTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGacca                                      >  1:242894/1‑250 (MQ=255)
                                                                                                                                                                                                                   gTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGacca                                      >  1:448961/1‑250 (MQ=255)
                                                                                                                                                                                                                            ttgttgCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGACCACCGAAATAAc                            <  1:446794/251‑1 (MQ=255)
                                                                                                                                                                                                                              gttgCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGc                                                                   <  1:396430/210‑1 (MQ=255)
                                                                                                                                                                                                                                                    gtcggGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGACCACCGAAATAACCATCATCGTAGCGGTTAAGAt       <  1:526888/250‑1 (MQ=255)
                                                                                                                                                                                                                                                     tcggGTAATCTCCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATATCATAAAATACGGCAGACCACCGAAATAACCATCATCGTAGCGGTTAAGATAg     <  1:473493/251‑1 (MQ=255)
                                                                                                                                                                                                                                                         gTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGACCACCGAAATAACCATCATCGTAGCGGTTAAGATAGTTa  <  1:288159/250‑1 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                         
TAGCAATAGTTATTGCTCACAGGTCAGAACTGTGGGTGATAAGGTCGGCAGGCTGCGCAAAGCTCACCGACTACCCGTGTTTGTGTTATTTTTTATTTACCTCCTATTTGCCTACACGAATTGTTATATCCCTAAATGCCAATGCATTATTAGCGATACTATCTTGCACGACAATCTTAAATCGGATGCTTGTGACTTGTGGCGGTAATATGTCCGTGACTTGTTGCGGATGCCAG‑TCAT‑CGGTCGGGTAATCACCGAGCAGCCCCGAATCAATAGATTTAACTAGATTATCGCTATTTAGCAACTGCACAATAACCTTACATTTACCGCGCCGTTGACTGTAACTCAAAATCTTATAGTTAAGCGCAAAGCGCCCAAACTCGCCAGGTGTAACGGCAAAAT‑CCCGGTAAAGTTCACTAGTCGGTGATAAGCTACTTGATAACATAAAATACGGCAGACCACCGAAATAACCATCATCGTAGCGGTTAAGATAGTTA  >  1/1482046‑1482542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑