| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,047,106 | 0 | G | A | 38.0% | 102.0 / 28.5 | 71 | S61F (TCC→TTC) | unknown | Sulfate transporter, CysZ‑type |
| Reads supporting (aligned to +/- strand): ref base G (33/11); new base A (0/27); total (33/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTGTAAACCAGCTTTTGCCATTCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGTGCGGTGAAAAAAATCAAACTTTGTC > 1/1046856‑1047352 | gCTGTAAACCAGCTTTTGCCATTCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAgg > 1:455639/1‑251 (MQ=255) tAAACCAGCTTTTGCCATTCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAaat < 1:476619/251‑1 (MQ=255) ttCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCTATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAc < 1:551997/251‑1 (MQ=255) ttCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAc < 1:294421/251‑1 (MQ=255) tCCCGTACCAGCATCCGCGGCACCTCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAc > 1:636802/1‑250 (MQ=255) tCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAc > 1:79384/1‑250 (MQ=255) cccGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAccg > 1:74002/1‑251 (MQ=255) gTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAccgccg > 1:590579/1‑251 (MQ=255) aTCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGtt > 1:294713/1‑251 (MQ=255) ccGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTca > 1:457592/1‑251 (MQ=255) cacaGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAAc < 1:2167/211‑1 (MQ=255) caGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCtaata > 1:178895/1‑251 (MQ=255) gggACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCtaataa > 1:483094/1‑250 (MQ=255) ggACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCGGAAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGAAAGCGGGGAAAAGACGAAGAAAAACAAAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTAAGCCAACCGGAATTGTAGGaa > 1:434929/1‑187 (MQ=255) ggACATATCCTGCAAATTTTCTCCGGACAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACa > 1:56712/1‑251 (MQ=255) ggACATATCCTACAAATTTTCCCCGGTCAGCATTTTTTCCACTTTTCCCGCCAGCAAGCC‑ATAAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGAAAAC‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGAAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAAc < 1:218411/250‑1 (MQ=255) gaacatacccggaaaaTTTTCTCCGGCCAGCATTTTTCCCACTTTTCCCGCAAGCAAGCA‑ATAAAAAGGCGCGGCGAAAAACCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACAAGAATCAAAAGAAGGAAAAGCAGCAACAAAC‑CGCCGCT‑CAACCAA‑CCCACCCAATCGGGAATGTAGAAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAAc < 1:234376/237‑1 (MQ=255) gaaCATATCCTGCAAATTTTCTCCGGTCAGCATTTTTCCCATTTTTCCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCAAAAAAGCCCGACAGCGGGGTAAAGACAAAGTAAAACAGAACGAAAATCATAAGAATGGAAAGCAGCAGCAAAC‑CGCCGCT‑AAACCAA‑CTCAGCAAATGGGAAATGTAGGAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAAc < 1:627352/248‑1 (MQ=255) aaCATACCCTGAAAATTTTCCCGGGTCAGCTTTTTTTCCCCTTTTCCCGCCAGCAAGCC‑ATAAAAAGGGGCGGCAAAAAAGCCCGACAGCGTGGAAAAGACGAAGAAAAACAGAACGAGAATCATAAGAAGGAAAAGCAGCAGAAAAA‑CGCCGCT‑AAACCAA‑CTCAGCCAATCGGAAATGTAGAAAATAATGCCGTC‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAg < 1:100265/250‑1 (MQ=255) aCATATCCTGAAAATTTTCCCCGGTCAGCATTTTTCCCACTTTTCCCGCCAAAAAGCC‑ATAAAAAGGCGCGGCAAAAAAGCCCGACAGCGTGGTAAACACGAAGAAAAACAGAACGAAAATCAAAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CACCCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAg < 1:288491/250‑1 (MQ=255) atacccTGCAAATTTCCCCCGGTAAGCATTTTTCCCACTTTTCCCCCCAGC‑AGCCAATAAAAAGGCGCGGAGAAAAAGCCCAACAGCTTGGAAAAAAGGAAATAAAACAAAACTAAAATCATAAGAGAGGAAACAAGCAACAAAA‑CCCCCCA‑CACCCAC‑CTCACCCAATCGGTAATGTAGAAAAAAATGCCGAC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCat < 1:446170/247‑1 (MQ=255) caaaaTTTCCCCCGGTAATCATTTTTCCCACTTTTCCCGCCAGCAAGAC‑ATAAAAAGGCGCGGCGATAAACCCCGAGAGCGGGATAAAGAGGAAAAAAAACAAAACGAAAATTATAAAAATGGAAAGCACCAGCAAAG‑CACC‑CTCCACCCAA‑CTCAACAAATCGGTAATTAAGAAAAAAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAAc < 1:137201/249‑1 (MQ=255) aaaaaTTTCCCCCGGACAGCATTTTTCCCCCTTTTCCCGCCAGAAAGCA‑ATAAAAAGGCGGGGCAATAAACCCGGACGGCGTGGTAAAAACAAAGTAAAACAAAACGAGAATCAAAAGAAGGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCACCCATCCGGAAAGGAAGAAAAAAATGCCTTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAAc < 1:269064/249‑1 (MQ=255) aaTTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGCTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAgg > 1:590924/1‑251 (MQ=255) aaTTTTCCCCGGTCAGCTTTTTTCCCCCTTTTCCCGCCAGCAAGCA‑ATAAAAAGGCGCGGCAAAAAAGCCCGACGGCGTGGAAAAGAAGAAATAAAAAAGAACGAGAATAAAAAGAAGGGAAAGCAGCAGCAAAA‑CGCCGCT‑CACCCAC‑CCCAGCCAAGCGGGAATGTAGGAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAgg < 1:177552/251‑1 (MQ=255) cccGGTCAGCTTTTTTCCCACTTTTCCCGCCAGCAAGCC‑ATAAAAAGGCGCGGCAATAAAGCCCGACAGCGTGGTAAAGACGAAGAAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAC‑CTCAGCCAATCGGGAATGTAGAAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCa < 1:460909/250‑1 (MQ=255) ttttttcCCCCTTTTCCCGCCAGAAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGAAAAGACGAAGTAAAACAGAACGAAAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCCCT‑CAACCAA‑CCCAGCAAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACaaa < 1:10209/250‑1 (MQ=255) ttttccccttttcccccccaccagtcc‑ATAAAAAGGCGCGTCGAAAAACCCCACCAGCGTGAAAAAGACAAAGAAAAACAGAACGAAAACCATAAAAAGGAAAAACCGCAACAAAA‑CGCCCCT‑CAACCAA‑CCCACCAAAGCGGGAATGAAGAAAATAAGGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAAc < 1:537265/226‑1 (MQ=255) ttttcccccTTTTCCCCCCAGCAAGCC‑ATAAAAAGGCGCGGCGAAAAACCCCGACAGCGTGGAAAAGACAAAGAAAAACAGAACGAGAATCAAAAAAATGAAAAGCAGCAGAAAAC‑CGCCGCT‑AAACCAA‑CTCAGCCAAGGGGGAATGTAGAAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAAc < 1:505939/243‑1 (MQ=255) ccGCAAGCAAGCA‑ATAAAAAGGCGCGGCAAAAAAGCCCGACAGCGTGGAAAAGACAAAGAAAAACAGAACGAAAATAAAAAAAAGGAAAAGCAGCAGCAAAC‑CGCCGCT‑AAACCAA‑CCCAGCCAATCGGGAATGTAGAAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTc < 1:341676/251‑1 (MQ=255) cccAGCAAGCC‑ATAAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGAAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGAAGGAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTg < 1:170965/250‑1 (MQ=255) cAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGAc > 1:76971/1‑188 (MQ=255) ataaaaaGGCGCGGCAATAAACCCCGACAGCGTGGTAAAGAAGAAGTAAAACAGAACGAGAATCATAAGAAGGAAAAGCAGCAGAAAAA‑CGCCGCT‑CAACCAC‑CTCAGCCAATGGGAAATGTAGAAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTc < 1:281111/235‑1 (MQ=255) aTTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAAc > 1:464390/1‑202 (MQ=255) aTTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAAt > 1:385957/1‑251 (MQ=255) aTTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAAt > 1:390634/1‑251 (MQ=255) aTTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGAAAAGACGAAGAAAAACAGAACGAAAATCATAAGAAGGGAAAGCAGCAGAAAAA‑CGCCGCT‑CACCCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAAc < 1:203158/190‑1 (MQ=255) aTTAAAAGGCGCGGCGATAAAGCCAGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAAt > 1:427923/1‑251 (MQ=255) gaaaaaaaccccGACAGCGTGGAAAAGACGAAGAAAAACAAAACGAGAATAAAAAGAAGGAAAAGCAGAAGAAAAC‑CGCCGCC‑CAACCAA‑CCCAGCCAATGGGGAATGTAGAAAAAAAGGCCGTA‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATcac < 1:133187/197‑1 (MQ=255) aaGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACaaaa > 1:506847/1‑249 (MQ=255) cccaaCAGCGTGTAAAAAACAAAGAAAAACAGAACGAAAACAAAAAGAAGGAAAAGCAGCAAAAAAA‑CCCCCCT‑CACCCAA‑CCCCGCCAATCGGAAATGTAGAAAATAAGGCCTTA‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTc < 1:592988/247‑1 (MQ=255) ggaaaaGACGAAGAAAAACAGAACAAAAATAAAAAGAAGAGAAAGCAGCACAAAAA‑CGCCGCC‑CAACAAA‑CTCAGCCAATCGGGAATGTAGAAAATAATGCCTTC‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAat < 1:424695/233‑1 (MQ=255) ggTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGt > 1:346448/1‑208 (MQ=255) ggTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGatt > 1:93653/1‑251 (MQ=255) ggTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGatt > 1:182138/1‑251 (MQ=255) ggTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGatt > 1:207836/1‑251 (MQ=255) ggTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGatt > 1:33471/1‑251 (MQ=255) gTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCa > 1:263461/1‑178 (MQ=255) aGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCat > 1:310800/1‑157 (MQ=255) aCGAAGAAAAAAAGAACAAAAATCATAAAAATGAAAAGCAGCAAAAAAC‑CGCCGCC‑CAACCAC‑CCCACCAAAGCGGAAATGTAGAAAATAATGCCGTA‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGatttcatttc < 1:569921/251‑1 (MQ=255) aaGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATcaca > 1:46613/1‑222 (MQ=255) gTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAAc > 1:211572/1‑233 (MQ=255) gTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCgt > 1:302325/1‑251 (MQ=255) aaTCATAAGAATGGAAAGCAGCA‑CAAAACCCCCGCT‑CAACCAA‑CCCAGCAAATCGGAAATGTAGAAAAAAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGt < 1:50135/251‑1 (MQ=255) aaaaaagggAAAGCAGCAGAAAAC‑CGCCCCT‑CAACAAA‑CTCAGCAAAGCGGAAATGTAGAAAAAAACGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATcc < 1:612392/244‑1 (MQ=255) aaaGAAAGGAAAGCAGCAGCAAAA‑C‑CCCCC‑CAAACAACCCCACCCAATCGGGAATGAAGAAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATcc < 1:435733/250‑1 (MQ=255) aagaaggaaaaGCAGCAGAAAAC‑CGCCGCT‑CAACCAC‑CCCAGCCAACCGGGAATGTAGAAAATAATGCCGTA‑AATAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATccc < 1:157370/243‑1 (MQ=255) aagaaggaaaaccagaagaaaacccccgcT‑CAACCAA‑CTCAGCCAAGCGGAAATGTAGAAAATAATGCCGTA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATccc < 1:161102/226‑1 (MQ=255) gAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAAc > 1:626487/1‑231 (MQ=255) acaAAA‑CGCCGCC‑CAACCAA‑CTCAGCAAATCGGAAATGTAGAAAAAAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAGTAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTc < 1:501917/250‑1 (MQ=255) cccgcT‑CAACCAC‑CCCACCCAAGCGGAAATGTAGAAAATAAT‑CCGGCAAATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATAc < 1:467052/250‑1 (MQ=255) ccT‑CACCCAA‑CTCTGCTAATGGGTAATGTAGAAAATAATGCCTTT‑ATTATAACCGCCGATTTGGTTCAC‑AAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATACCAACCCATCCCAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAg < 1:629694/250‑1 (MQ=255) cccaaaccaa‑ccCAGCCAACCGGAAATTAAGAAAATAATGCCGAC‑AAAAAAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACaaa < 1:386347/247‑1 (MQ=255) ccaaccaacCTCAGCAAATGGGAAAGGTAGAAAATAATGCCTAA‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAg < 1:347820/250‑1 (MQ=255) caaccaa‑cTCACCCAATCGGGAATGTAGAAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACAt < 1:581282/210‑1 (MQ=255) ccaa‑cTAAACCAATCGGGAATGTAGAAAATAATGCCTTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGTGCgg < 1:322581/251‑1 (MQ=255) caa‑cTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGt > 1:26799/1‑211 (MQ=255) a‑cTCAGCCAATCGCGAATGGAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACCGACCGCATAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTAAGGCTACAAAGAGCGGTGa > 1:358916/1‑251 (MQ=255) aGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCCCGGGTTTAACCATAGCGTAATCCCAAAAAAAAAAGAGTTTAAGATTACAAAGTGCGGGGaaaaa > 1:512345/1‑251 (MQ=255) tGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGCGCGGTGAAAAAAATCAAACTTTGt > 1:211720/1‑251 (MQ=255) gTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAGAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGTGCGGTGAAAAAAATCAAACTTTGt > 1:64151/1‑250 (MQ=255) tAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGTGCGGTGAAAAAAATCAAACTTTGTc < 1:399096/250‑1 (MQ=255) | GCTGTAAACCAGCTTTTGCCATTCCCGTACCAGCATCCGCGGCACATCTTTCATAAAATCCCACAGGGACATATCCTGCAAATTTTCTCCGGTCAGCATTTTTTCCACTTTTTCCGCCAGCAAGCC‑ATTAAAAGGCGCGGCGATAAAGCCCGACAGCGTGGTAAAGACGAAGTAAAACAGAACGAGAATCATAAGAATGGAAAGCAGCAGCAAAA‑CGCCGCT‑CAACCAA‑CTCAGCCAATCGGGAATGTAGGAAATAATGCCGTC‑AATATAACCGCCGATTTGGTTCACAAAAAGCCAAAACAGACCGCCTAATAACAGCATATTTAACAGGATCGGCATGATCACAAAACGGCGCAGCCCTTTCTGTAAAATCAAATGCCAACCCATCACAAAATATTCAAAACCGGATTTCATTTCCGCGTGTTTCAACATAGCGTTATCCCTAAGAAAAAAGAGGTTCAGGATACAAAGTGCGGTGAAAAAAATCAAACTTTGTC > 1/1046856‑1047352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |