| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,938,523 | 0 | T | G | 37.7% | 104.9 / 11.3 | 53 | V85G (GTG→GGG) | unknown | S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase (EC 2.4.99.17) |
| Reads supporting (aligned to +/- strand): ref base T (9/24); new base G (20/0); total (29/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.56e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGTTGCCGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATATCGATCGCCCCGATGAAGAAGCGGATCAG > 1/1938275‑1938773 | tgtTGCCGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGgtg < 1:280872/250‑1 (MQ=255)tgtTGCCGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGgtg < 1:234592/250‑1 (MQ=255) ccGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAg < 1:499403/250‑1 (MQ=255) ccGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAg < 1:450246/250‑1 (MQ=255) ccGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAg < 1:229736/250‑1 (MQ=255) ccGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGc < 1:98205/251‑1 (MQ=255) tGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCtttttt < 1:221831/251‑1 (MQ=255) ccTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGGAAATAGAGGGGTTGGTGGAGCGGGGGTTAAGCGAATCCCtttttttttctca > 1:246882/1‑245 (MQ=255) gatgaGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGGAAATAGAGGGGTTGGTGGAGCGGGGGTTAAGCGAATCCCTTTTTTTTGCTCATGt > 1:456812/1‑251 (MQ=255) aaaCGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCgaaggaa < 1:274756/251‑1 (MQ=255) aCTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAAc < 1:385826/251‑1 (MQ=255) ggTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGGGGGGGGGGGGTTAAGCGAATCCCCTTTTTTAGCTCATGTTTGCGCCTCCAAAGCACCGAAGGAAGGGGC‑GGAATTGAT‑CTTTGGCGAGGATAAAATggggga > 1:158637/1‑248 (MQ=255) ggTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGGGGAGCGGGGGTTAAGCGAAACCCTTTTTTTTGCTCCTGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGGATTGAT‑CTTAGGGGGGGGTAAACTggggga > 1:59581/1‑248 (MQ=255) cTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCAtggtg < 1:590069/251‑1 (MQ=255) cTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAAAAGAGGTGTTGGTGGGGCGGGTGGTAAGCGAATCCCTTTTTTTAGCTCCTGTTCTCGCCCCCAAAACACCCAAGGAAGGCGC‑GGAATTGAT‑CTTATGCGAGGATAAACTGGGGGAAGGTCACAGCGCAAAcagtctcttataa > 1:76243/1‑239 (MQ=255) ttAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTgggg < 1:389090/251‑1 (MQ=255) tgtgTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGGTGGTGGAGCGGGGGGTTAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCCAAGCACCGAAAGAAGGGGC‑GGGAATGAT‑CTTTTGCGGGGGTAAACTGGGGGAAGGGCACGGGGGAAAAGCCGTCATGGGGGGGGGTccaa > 1:420723/1‑248 (MQ=255) gtgtTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAg < 1:103664/250‑1 (MQ=255) tgtTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGc < 1:212831/251‑1 (MQ=255) gATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGGAAATCCAGGGGGTGGGGGGGGGGGGGTTTAGTGAATTCCTTTTTTTAGCTCATGTTTGCGCCTCCAAAGCACCGAAGGGAGGCGC‑GGAATTGAT‑ATTAGGCGGGGGTAAAATGGGGGAAGGGAACGGCGGGAAAGCCGTCATGGGGGGGGGGCAAgggaggtt > 1:333589/1‑245 (MQ=255) cTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGTGGGGCGGGGGTTAAGCGAAACCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAACACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGGGGGTAAACTGGGGGAAGGGCACGGCGGAAACGCCGGCATGGTGGGGGGGCAAGGCAgtttgtt > 1:158767/1‑251 (MQ=255) gATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGGAAATAGAGGGGGTGGTGGAGGGGGGGGTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGG‑GGGATTGAT‑CTTAGGGGAGGATAAAATggggg > 1:528777/1‑198 (MQ=255) gATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGGGGTAAGCGAATCCCTTTTTTTAGGTCATGTTCGCGCCTCCAAAGCACCgaagga > 1:599956/1‑162 (MQ=255) atCTTCAATAATACCCGTGTGATTCCTGCCCGGATGTTCGGGCGTAAAAGCAGTGGCGGGGAAACAAAGGTGGTGGTGGGGCGGGGGTTTAACGAATCCCTTTTTTTAGCCCCAGTTTCCGCCCCCCAAGCACCCAAGGAAGGCGC‑GGAATTGATACTT‑GGCGCGGATAAAAACGGGGAAGGTCCCGGCGGAAACGCCCTCATGGGGGGGGGGCAAGGCAGTTTGTTTGAGATctttcccttttacccat > 1:132000/1‑234 (MQ=255) tCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAg < 1:245437/251‑1 (MQ=255) cTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAAAGGGGTTGGTGGAGGGGGGGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAACACCGAAGGAAGGGGC‑GGAATTGAT‑CTTAGGCGAGGATAAAATGGGGGAAGGGCAAGGCGGAAAAACCGTCATGGTGGGGGGTCAAGGCAGGTTTTTTGAGATCGAAATATCCGAAAAACaaa > 1:521005/1‑249 (MQ=255) cTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAAAAGAGGGGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCCCGCCCCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGGTTGTTTTAGATCGAAATAACCGAAAAACAGa > 1:267519/1‑251 (MQ=255) cAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAAAAGAGGGGTTGGGGGGGCGGGGGGTAAGCGAATCCCTTTTTTTATCTCATGTTTGCGCCTCCAAAGCACCGAAGGGAGGCGCGGGAATT‑AT‑TTTAGGGGAGGGTAAAATGGGGGAAGGGCACGGCGGAAACGCCGGCCTGGGGGGGCGGCAAAGGAGTTTGTTTGGGATTGaaaaaacccgaaaaaagacc > 1:324990/1‑233 (MQ=255) ataataCCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGGTGGGGGGGCGGGGGTTAAGCGAATCCCTTTTTTTTGCTCATGTTTGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGGATTGAT‑CTTTGGCGAGGATAAACTGGGGGAAGGGCACGGCGTAAACGCCGTCATGGTGGGGGGGCAAGGCAGGTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGc > 1:157522/1‑250 (MQ=255) taCCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGTGGAGCGGGGGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGGTAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAACCGAAAAACAGACCGCACttt > 1:66439/1‑251 (MQ=255) taCCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAAAAGAGGGGTTGGGGGGGCGGGGGGTAAGCGAATCCCTTTTTTTAACTTCTGTTCGCGCCTCCAAAGCCCCCAAGGAAGGCGC‑GGGATTGAT‑CTTAGGCGGGGGTAAAATTGGAGAAGGGCACGGCGTAAAAACCGTCATGGTGGGGCGGCAAGGCAGTTTGTTTTAGATCGAAATAACCGAAAAACAGACCGCAcctt > 1:644876/1‑248 (MQ=255) aCCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGGGGGGCGGGGGGTAAGCGAATCCCTTTTTTTTGCTCATGTTCGCGCCCCCCAAGCACCGAAGGAAGGGGC‑GGGATTGAT‑CTTAGGCGGGGGTAAAATGGGGGAAGGGCACGGCGTAAACGCCCGCCTGGGGGGGGGGCCAGGCAGTTTGTTTGGGATCGaaaaaaccggaaaaaaaaccgccccttt > 1:216448/1‑226 (MQ=255) tgtgATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGAt < 1:280874/250‑1 (MQ=255) tgtgATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATg < 1:243953/251‑1 (MQ=255) tgtgATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATg < 1:89484/251‑1 (MQ=255) gtgATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGTGGGGCGGGGGTTTAGCGAATCCCCTTTTTTAGCTCATGTTTGCGCCTCCAAAACACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGGAAAAATGGGGGAAGGGCACGGCGGAAAAGCCGTCATGGTGGGGGGTCCAGGCAGGTTGTTTGAGATCGAAATAACCGAAAAAAAGACCGCCCTTTTTTATGt > 1:216490/1‑251 (MQ=255) tCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGc < 1:524418/251‑1 (MQ=255) cTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGGGTTGGGGGAGCGGGGGTTAAGCGAATCCCTTTTTTTTGCTCATGTTTGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGGATTGAT‑CTTTGGCGGGGGTAAACTGGGGGAAGGGCACGGCGGAAACGCCGTCATGGGGGGGCGGCAAGGCAGGTTGTTTGAGATCGAAAAAACCGGAAAAAAGAACGCCCTTTTTGATGTATTGCAg > 1:83881/1‑251 (MQ=255) gATGTTCGGGCGTAAAAGCAGTGGCGGGAAAAAAGAGGGGTTGGGGGGGCGGGGGTTAAGCGAATCCCTTTTTTTTGCTCATGTTCGCGCCTCCAAAACACCGAAGGAAGGCGC‑GGAATTTAT‑CTTTGGCGAGGATAAAATGGGAGAAGGGGACGGCGGAAAAGCCGGCATGGGGGGGGGGCAAAGCAGGTTGTTTGAGATCGAAATAGCCGAAAAAAAAACCGCACTTTTTGATGTATTGcggcacgt > 1:70660/1‑242 (MQ=255) ttCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGc < 1:461932/250‑1 (MQ=255) ggCGTAAAAGCAGTGGCGGGAAAATAAAGGGGTTGGTGGGGCGGGGGTTAAGCGAATCCCTTTTTTTTGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGGATTGAT‑CTTAGGGGGGGGTAAACTGGGGGAAGGGCACGGCGTAAACGCCGTCATGGGGGGGGGGCAAGGCAGGTTGTTTGGGATCGAAATAGCCGAAAAACAGACCGCCCTTTTTGATGTATTGGAGAAAAACggggcaatg > 1:1607/1‑245 (MQ=255) cGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGc < 1:39853/250‑1 (MQ=255) ggAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCCCCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTatat < 1:494485/250‑1 (MQ=255) ggAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTatat < 1:22857/250‑1 (MQ=255) ggAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTatat < 1:327357/250‑1 (MQ=255) aaaTAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTatat < 1:228626/247‑1 (MQ=255) aaaTAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATatcgat > 1:429087/1‑251 (MQ=255) aTAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATatcgatcg > 1:460620/1‑251 (MQ=255) aTAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATatcgatcg > 1:80796/1‑251 (MQ=255) ggTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACttt < 1:106392/194‑1 (MQ=255) gtgtTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACt > 1:94043/1‑104 (MQ=255) ggTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCTCGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGAc < 1:335173/171‑1 (MQ=255) ggTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATatcg > 1:60840/1‑227 (MQ=255) ggTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATATCGATCGCCCCGATGAAGAAGCGGAt > 1:196095/1‑250 (MQ=255) ggTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATATCGATCGCCCCGATGAAGAAGCGGAt > 1:238585/1‑250 (MQ=255) tgtTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATATCGATCGCCCCGATGAAGAAGCGGATCAg > 1:570811/1‑251 (MQ=255) | TGTTGCCGATTTTTATTTTGATTTACCTGATGAGTTGATTGCCCGTTATCCGAAAACGGAGCGGACAGCCAGCCGATTGTTACAACTGGATGGTGAAAACGGGGAAATTTTTCACCGCACTTTTAGTGATGTGTTGGATCTGATTAACCCCGGCGATTTGATGATCTTCAATAATACCCGTGTGATTCCTGCACGGATGTTCGGGCGTAAAAGCAGTGGCGGGAAAATAGAGGTGTTGGTGGAGCGGGTGTTAAGCGAATCCCTTTTTTTAGCTCATGTTCGCGCCTCCAAAGCACCGAAGGAAGGCGC‑GGAATTGAT‑CTTAGGCGAGGATAAACTGGGAGAAGGTCACGGCGTAAACGCCGTCATGGTGGGGCGTCAAGGCAGTTTGTTTGAGATCGAAATAGCCGAAAAACAGACCGCACTTTTTGATGTATTGCAGAAAATCGGGCACATGCCGTTGCCGCCGTATATCGATCGCCCCGATGAAGAAGCGGATCAG > 1/1938275‑1938773 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |