| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,665,707 | 0 | C | T | 40.0% | 97.1 / 34.5 | 72 | intergenic (‑39582/‑33837) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (37/5); new base T (0/28); total (37/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.49e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAATATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCA > 1/1665463‑1665950 | cAATATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAAt > 1:207548/1‑251 (MQ=255) aaTATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAAtt > 1:767117/1‑251 (MQ=255) atatGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTACCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAAttt > 1:174198/1‑251 (MQ=255) tatGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAAtttt > 1:398486/1‑251 (MQ=255) atGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAAttttt > 1:787381/1‑251 (MQ=255) tgattgaGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCa > 1:636642/1‑251 (MQ=255) cagaaaaacaaaacTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAC‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCGGAATTTCCCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTCCCCAAACAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCaa < 1:194919/245‑1 (MQ=255) aaaaacaaaacTATTCAAGTAGAGCTTAACCCGAT‑TTTC‑GCAAAACCCTCTTTTTTATTAAATCCTCTCAACAGCGTTAAAATTGATTTTTTTCCTGATTTTCCCGCCACATTGCTGGAAGCTTTAGTGCAAGTTTTCCCCGAACAAAAAAATCATCACCGCTCCCCTGAACCCACTTACCCGTTGAGTAAACAATTCCTGGCGGAACAGTT‑CCGGTTTAATTTTTTACCGCCGATGGCATATCaaaa < 1:736670/247‑1 (MQ=255) accaatccaattAGAGCTT‑AACCGAATTTTCGCAAAAA‑CCTTTTTTTAATGCAATGCTCTCAACAGCGGTGAAATTGATATTTTTCAAAAATTACCCGGCTCAGTGCCGGAAGCTTTAGGGCAGGTGTTCCCCAAAAAAAAAAATCACCACCACGCTCCGGAACCCACTTAACAGCTGAGAAAACATTTGCGGGCGGAAC‑GTTCCCGGGTTGATTTTTTGCCGCCGATGGCATATCAAAATACCTATGCAt < 1:176120/240‑1 (MQ=255) ttCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCa > 1:365512/1‑251 (MQ=255) taaaGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACAGTGCGGGAAGCCTTAGTGCAAGTGTTCCCCGAAAAAAAAAACCATCCCCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTCCTGGCGAAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAg < 1:173014/249‑1 (MQ=255) gctaaaaCCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTCCCGGCACAGTGCTGGAAGCTTTAGTGAAATTTTTACCCGAACAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGc < 1:241473/236‑1 (MQ=255) ttAAACCAAA‑TTACGGCAAAA‑CCTCTTTTTTATTCAAGGCCCTCAACAGCGATGAATTTGATATATATCCTGAATTTCCAGGCAGAGTCTTAGAGGTCTTAGGACAATTCTTCCCCGAAAAAAAAAAACACCCCCACCCACCGGAAACCGCTTACCAGCGGAGAAAATAATTACTGGGGTAACGCTT‑CCGGTTATAATGTGGACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGcc < 1:802523/251‑1 (MQ=255) ccGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATTTTTATCCTGAATTTACCGGCACAGTGCTGGAAGCTTTAGTGCAAGTTTTACCCGAAAAAAAAAATCATCCCCGCTCTCCTGAAACCTCTTATCAGCTGAGTAAACAATTACTGGCGAAACAGTC‑CCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATgg < 1:56130/251‑1 (MQ=255) aa‑TTTCGGCAAAA‑CCTTTTTTTTATTCAATGCTCCAAACAGGGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGAAAGTGTTCCCCGAAAAAAAAAATCATCCCCGCTCTCCTGAACCCACTTATCAGCGGAGAAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGc < 1:213852/251‑1 (MQ=255) aa‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTAAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGAAAGTGTTACCCGAAAAAAAAAATCACCCCCGCTCTCCTGAACCCACTTATCAGCTGAGTAAACAATTACTGGCGAAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGc < 1:366526/251‑1 (MQ=255) cGGCAAAC‑CCTCTTTTTTATTCAATCCTCTCAACAGCGGTAAAATTGATTTTTATCCTAAATTTCCCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTCCCCGAAAAAAAAAATCATCCCCGCTCTCCTAAACCCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGTTTAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:109572/251‑1 (MQ=255) ttataagagacattttttATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACAGTGCGGGAAGCCTTAGTGAAAGTGTTACCCGAACAAAAAAATCATCCCCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTCCTGGCGAAACAGTT‑CCGGCTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac < 1:101225/239‑1 (MQ=255) ttttttATTCAATCCTCTCAACAGCGGTAAAATTGATATTTATCCTAAATTTCCCGGCACAGTGCTGAAAGCTTTAGTGCATGTTTTCCCCGAACAAAAAAATCACCCCCGCTCTCCAAAAACCACTTATCAGCGGAGTAAACAATTACTGGCGAAACAGTT‑CCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaa < 1:481363/251‑1 (MQ=255) ttttttATGCAAACCTCTCAACAGCGGTGAAAGTGATATTTATCGTAAATTTCCCGGCACAGGGCAGGAAGCTTTATTTCAAGTGTTACCCGACAAAAAAAAACTTCCCCGCTCTCTTAAACCCACTTATCATCTGAGTAAAAAATTACTGGGGGAACATTT‑CCGGGTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaa < 1:690758/251‑1 (MQ=255) gCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTCCCCGAAAAAAAAAATCACCCCCGCTCTCCTGAACCCACTTATCAGCTGAGTAAACAATTCCTGGCGGAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCt < 1:183789/190‑1 (MQ=255) gCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGAttt > 1:335942/1‑251 (MQ=255) tctcAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTa > 1:74363/1‑250 (MQ=255) ctcAACAGCGGTGAAATTGATATTTATCCTGAATTTCCCGGCACAGTGCTGGAACCCTTAGTGCAAGTTTTACCCGAACAAAAAAATCATCCCCGCTCTCCTGAACCCCCTTATCAGCTGAGTAAACAATTCCTGGCGGAACATTT‑CCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAg < 1:546646/199‑1 (MQ=255) atatTTATCTTGAATTTCCGGGAAAAGGGCGGGAAGCCTTAGTGCAAGTGTTCCCAAAAAAAAAAAATCACCACCGCTCCCCTAAACCCCCTTATCAGTTGAATAAACAATTACGGGCGGAACATTT‑CCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACAtt < 1:26534/251‑1 (MQ=255) tatTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAacac > 1:725476/1‑203 (MQ=255) aTCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCgcgc > 1:728679/1‑250 (MQ=255) aTCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCgcgc > 1:356745/1‑250 (MQ=255) aTCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCgcgc > 1:488031/1‑250 (MQ=255) gAATTTCCCGCCACAGTGCTGGAAGCCTTAGTGCAAGTGTTCCCCGAACAAAAAAATCACCCCCCCTCCCCTGAACCCACTTATCAGCTGAGTAAACAATTACTGGCGAAACAGTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGcaaca < 1:199671/207‑1 (MQ=255) gAATTTACCGGCACAGTGCTGAAACCCTTAGTGCAATTTTTACCCGAAAAAAAAAATCATCCCCGCTCTCCAGAAACCACTTATCAGCGGAGAAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCa < 1:596803/231‑1 (MQ=255) tcccggcaaagggcggaaaGCTTTAGTGCAAGTTTTACCCAAAAAAAAAAACCATCCCCGCTCTCCTAAAACCACTTATCAGCTGAGAAAACAATTACGGGCGAAACAGTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCacac < 1:154383/234‑1 (MQ=255) tcccGGCACAGTGCTGGAAGCTTTAGTGCAAGTGTTCCCCAAAAAAAAAAATCATCCCCGCTCTCCTGAAACCATTTATCAGCTGAATAAACAATTACTGGCGGAACAGTC‑CGGGTTTGATTTTTTGCCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCacac < 1:485520/249‑1 (MQ=255) tACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATc > 1:335761/1‑143 (MQ=255) tACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg > 1:187213/1‑193 (MQ=255) tACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTcaca > 1:613362/1‑250 (MQ=255) tACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTcaca > 1:515010/1‑250 (MQ=255) gCACAGTGCGGGAAGCTTTAGTGCAAGTTTTCCCCAAAAAAAAAAATCACCCCCGCTCTCCTGAACCCCCTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg < 1:333958/188‑1 (MQ=255) cacaGTGGGGGAAGCCTTAGTGAAAGTGTTACCCGAAAAAAAAAAACATCCCCGCTCCCCTGAACCCATTTATCAGCTGAGTAAACAATTTCTGGCGGAACATTT‑CCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGaa < 1:342516/250‑1 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATggg > 1:299284/1‑183 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:513165/1‑249 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:628521/1‑249 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:233494/1‑249 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:24517/1‑249 (MQ=255) gTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAAttt > 1:76902/1‑249 (MQ=255) gCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGc > 1:264299/1‑206 (MQ=255) gCCTTAGTGAAAGTGTTCCCCGAAAAAAAAAATCATCCCCGCCCCCCTAAACCCACTTATCAGCTGAGAAAAAAATTACTGGCGGAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAg < 1:344716/145‑1 (MQ=255) ccTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATAcc > 1:420197/1‑131 (MQ=255) ccTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATg > 1:390817/1‑159 (MQ=255) ccTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGt > 1:97493/1‑250 (MQ=255) gTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATgg > 1:767507/1‑251 (MQ=255) tgaaaGTGTTCCCCAAAAAAAAAAATCACCCCCGCTCTCCTAAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGc < 1:35257/248‑1 (MQ=255) agttttccccaaaCAAAAAAACCACCCCCGCTCCCCAAAACCCACTTATCAGCTGATTAAAAAATTACTGGCGGAACATTC‑CCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTAcat < 1:300570/176‑1 (MQ=255) gtgtTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATaa > 1:264449/1‑251 (MQ=255) tttccccaaaaaaaaaaaCCATCCCCGCTCTCCTGAACCCTTTTATCAGCTGATTAAACAATTACTGGCGAAACAGTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAg < 1:360751/240‑1 (MQ=255) taccccaaaaaaaaaaaTCATCCCCGCTCTCCTAAAACCACTTATCAGCTGAGAAAACAATTACTGGCGGAACAGTC‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAgg < 1:197910/241‑1 (MQ=255) aaaaaaaaaCCATCCCCGCTCTCCTGAAACCATTTATCAGCTGAAAAAACAATTACTGGCGAAACATTT‑CCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAAt < 1:38510/249‑1 (MQ=255) cAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAAt > 1:760293/1‑250 (MQ=255) cGCTCCCCTGAACCCACTTACCAGCTGAGAAACCAATTACTGGCGGAAC‑GTTCCCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCAttagttt < 1:81517/251‑1 (MQ=255) ctcCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATtagtttagtt > 1:366842/1‑251 (MQ=255) ctcCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGCGACAATCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATtagtttagtt > 1:221539/1‑251 (MQ=255) ccTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATaaa > 1:49377/1‑219 (MQ=255) cggagaaaaaatttACTGGCGGAACAGTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc < 1:536868/238‑1 (MQ=255) cTGAGTAAACAATTACTGGCGGAACATTT‑CCGGTTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAcc < 1:288788/251‑1 (MQ=255) gAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc > 1:730268/1‑248 (MQ=255) aaCAATTACGGGCGAAACAGTT‑CCGGTTTGATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACAtt < 1:250716/146‑1 (MQ=255) ccgggCGAAACAGTC‑CCGGTTTAAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACT‑GAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:379587/248‑1 (MQ=255) tgggCGGACCTGTT‑CGGGTTTGAATTTTTGCCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:706190/249‑1 (MQ=255) aaaaagaaaaaGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:523148/241‑1 (MQ=255) tGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACg > 1:232676/1‑251 (MQ=255) gTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCtcgat > 1:46564/1‑157 (MQ=255) gTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTca > 1:510168/1‑251 (MQ=255) | CAATATGTACAAACTGTTGATTGAGCAGGAAAACAAAACTATTCAAGTAGAGCTTAAACCGAA‑TTTCGGCAAAA‑CCTCTTTTTTATTCAATGCTCTCAACAGCGGTGAAATTGATATTTATCCTGAATTTACCGGCACAGTGCTGGAAGCCTTAGTGCAAGTGTTACCCGAACAAAAAAATCATCACCGCTCTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTT‑CCGGCTTGAATTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCA > 1/1665463‑1665950 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |