Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,481,810 A→C intergenic (+149192/+105323) unknown → / ← unknown tRNA‑Met‑CAT/tRNA‑Val‑GAC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,481,8100AC100.0% 91.3 / NA 27intergenic (+149192/+105323)unknown/unknowntRNA‑Met‑CAT/tRNA‑Val‑GAC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (13/14);  total (13/14)

CGAAGGCTTGCAGCCCGGTAAATAATGCTCGATGTTATTCGGGCATTTTTATTTGTTGCGCGCTGATGATTTTAATCGAGAAATGAAAATTTCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTTCATAACGTTTAACTAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTCATTAAATCGTAGTGTTCATTTACTTTGTCACTAATTTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTAAAAATGACTGGGTAAAAAAATTTATTTCTTGAAGATTTGATTTTTTGAGCGTTTATGATGATGAGATATTCGTGAGTTTTTAGA  >  1/1481571‑1482047
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
cGAAGGCTTGCAGCCCGGTAAACCATGCTCGATGTTATTCGGGCATTTTTATTTTTTGCGCGTACCTAAATTTAATCGAGAAATGAAAATTTCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAAcc                                                                                                                                                                                                                                     <  1:367120/250‑2 (MQ=255)
                                                              tacctaaatttAATCGAGAAATGAAAATTTCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAAt                                                                                                                                                                                                                 >  1:749381/9‑208 (MQ=255)
                                                                                      aaaTTTCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGACTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATAtatta                                                                                                                                              <  1:358946/251‑1 (MQ=255)
                                                                                         tttCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGt                                                                                                                                           <  1:641107/251‑1 (MQ=255)
                                                                                                         aTACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATgg                                                                                                                           <  1:334688/251‑1 (MQ=255)
                                                                                                            ccccTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAAc                                                                                                                                                                                                              >  1:520655/1‑165 (MQ=255)
                                                                                                            ccccTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATAtatt                                                                                                                                               <  1:332040/228‑1 (MQ=255)
                                                                                                            ccccTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTaa                                                                                                                        >  1:814500/1‑251 (MQ=255)
                                                                                                                                  gctgATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATAtatt                                                                                                                                               >  1:591573/1‑206 (MQ=255)
                                                                                                                                    tgATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAActc                                                                                                                                                                                                            <  1:562196/143‑1 (MQ=255)
                                                                                                                                     gATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACatatat                                                                                                                                                <  1:873395/202‑1 (MQ=255)
                                                                                                                                     gATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATAtatta                                                                                                                                              <  1:882711/204‑1 (MQ=255)
                                                                                                                                         aGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACatatat                                                                                                                                                >  1:413914/1‑198 (MQ=255)
                                                                                                                                              aTGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTgtgt                                                                                                                                                                                                       >  1:182044/1‑138 (MQ=255)
                                                                                                                                                   aTACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTaaaaa                                                                                  <  1:732398/250‑1 (MQ=255)
                                                                                                                                                      cGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTAAAAATGa                                                                               >  1:684168/1‑250 (MQ=255)
                                                                                                                                                                                       gTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAAc                                                                                                                                                                                                              <  1:324039/90‑1 (MQ=255)
                                                                                                                                                                                                aaTCAATATTTATTGATATTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGt                                                                                                                                           <  1:281235/148‑1 (MQ=255)
                                                                                                                                                                                                     atatTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGt                                                                                                                                           >  1:796235/1‑143 (MQ=255)
                                                                                                                                                                                                               aTGTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTaatccgtagcg                                                                                                                                                                                     >  1:502915/1‑82 (MQ=255)
                                                                                                                                                                                                                 gTTACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTAtt                                                                                                                                                                                                <  1:792150/78‑1 (MQ=255)
                                                                                                                                                                                                                  ttACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACatatat                                                                                                                                                >  1:294688/1‑125 (MQ=255)
                                                                                                                                                                                                                  ttACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATAtatt                                                                                                                                               <  1:659191/126‑1 (MQ=255)
                                                                                                                                                                                                                  ttACAAGGCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTaaaaa                                                                                  >  1:661888/1‑187 (MQ=255)
                                                                                                                                                                                                                         gCTTTATTTCTTCAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACat                                                                                                                                                    >  1:676356/1‑114 (MQ=255)
                                                                                                                                                                                                                                 tcttcAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTAAAAATGACTGGGTAAAAAAATTTATTTCTTGAAGATTTGATTTTTTGAGCGTTTATGATGATGAGATATTCGTGAGTTTTTag   <  1:352855/251‑1 (MQ=255)
                                                                                                                                                                                                                                  cttcAGTTTCCATCACGTTTAACCAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTTATTAATCCGTAGCGTTTATTAACGAAGTCACTAAATTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTAAAAATGACTGGGTAAAAAAATTTATTTCTTGAAGATTTGATTTTTTGAGCGTTTATGATGATGAGATATTCGTGAGTTTTTaga  >  1:313791/1‑251 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             
CGAAGGCTTGCAGCCCGGTAAATAATGCTCGATGTTATTCGGGCATTTTTATTTGTTGCGCGCTGATGATTTTAATCGAGAAATGAAAATTTCCCGCCCCTGCAAATACCCCTAAAGCCACGTAATAACTGCTGATTAGATAATGCGATACGTGCTTGAATTTATGCTTACATTTTTAAATAAGTCTTGATAAATCAATATTTATTGATGTTACAAGGCTTTATTTCTTCAGTTTTCATAACGTTTAACTAGTAAGAGTGACCTGTGAATAACTCTGTGTTTTCATTAAATCGTAGTGTTCATTTACTTTGTCACTAATTTCGCATAACATATATTATGTTAAATAAAATAAATGGTAAGTCACTTCTGGGAATTTGAGATTTGCTCTCTTTAAAAATGACTGGGTAAAAAAATTTATTTCTTGAAGATTTGATTTTTTGAGCGTTTATGATGATGAGATATTCGTGAGTTTTTAGA  >  1/1481571‑1482047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑