Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,321,684 T→C intergenic (+14737/‑10858) unknown → / → unknown tRNA‑Gln‑TTG/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,321,6840TC100.0% 81.0 / NA 25intergenic (+14737/‑10858)unknown/unknowntRNA‑Gln‑TTG/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (10/15);  total (10/15)

ATTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTTCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGATAAAAATGTGAACATTTTTTTAGGTCGCCATATTGGTTAGCGAGTTTATTTTCTTTCCAGTACTTAGCCCATCCTAATCCTA  >  1/1321449‑1321921
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                             
aTTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACa                                                                                                                                                                                                                                <  1:145024/251‑1 (MQ=255)
                     cAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAAc                                                                                                                                                                                                           <  1:399670/251‑1 (MQ=255)
                                      ttGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACAt                                                                                                                                                                                                                               <  1:538589/214‑1 (MQ=255)
                                      ttGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAat                                                                                                                                                                                                                >  1:265624/1‑229 (MQ=255)
                                             aTTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTCTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTa                                                                                                                                                                                                         <  1:286851/229‑1 (MQ=255)
                                                        aGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAAc                                                                                                                                                                                                           <  1:140500/216‑1 (MQ=255)
                                                                  aaaaaGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAAc                                                                                                                                                                        <  1:882210/241‑1 (MQ=255)
                                                                    aaaGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAAt                                                                                                                                                            <  1:873516/251‑1 (MQ=255)
                                                                                                                                 gCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCaaa                                                                                                <  1:135644/250‑1 (MQ=255)
                                                                                                                                            gTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAAc                                                                                                                                                                                                                                 <  1:129688/110‑1 (MQ=255)
                                                                                                                                            gTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACAt                                                                                                                                                                                                                               >  1:326978/1‑112 (MQ=255)
                                                                                                                                            gTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAgg                                                                                                                                                                                                       <  1:117301/136‑1 (MQ=255)
                                                                                                                                            gTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGc                                                                                                                                                  <  1:827236/189‑1 (MQ=255)
                                                                                                                                            gTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGa                                                                                    >  1:186542/1‑251 (MQ=255)
                                                                                                                                                       gATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACa                                                                                                                                                                                                                                >  1:308016/1‑100 (MQ=255)
                                                                                                                                                       gATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGATAAAAATGTGa                                                                         >  1:295589/1‑251 (MQ=255)
                                                                                                                                                            aGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGt                                                                                                                                                                                      <  1:11667/137‑1 (MQ=255)
                                                                                                                                                             gATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGATAAAAATGTGAACAttt                                                                   >  1:19038/1‑251 (MQ=255)
                                                                                                                                                              aTCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAat                                                                                                                                                                                                                <  1:786794/109‑1 (MQ=255)
                                                                                                                                                                                       aGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAAcc                                                                                                          <  1:557894/186‑1 (MQ=255)
                                                                                                                                                                                                   ttattGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGt                                                                                                                                                                                      >  1:832624/1‑98 (MQ=255)
                                                                                                                                                                                                   ttattGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAAcc                                                                                                                                                                       <  1:68850/113‑1 (MQ=255)
                                                                                                                                                                                                               cTCAATTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATA‑TTTTAAACCATTTCCTAAATTc                                                                                                                                                          >  1:716990/1‑113 (MQ=255)
                                                                                                                                                                                                                  aaTTAGTTTAGTGGCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGt                                                                                                                                            >  1:520726/1‑125 (MQ=255)
                                                                                                                                                                                                                               gCAGTTTCCTTTCCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGATAAAAATGTGAACATTTTTTTAGGTCGCCATATTGGTTAGCGAGTTTATTTTCTTTCCAGTACTTAGCCCatcctaatccta  >  1:117123/1‑250 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                             
ATTTTAAAAGAAATAAATTTTCAAAATTTTTTGATTAATTGCTGAATTTGTGACCTAGATCACAAAAAAAAGAGGGGGGAATTTTAAAAAGTGCGGTAGGAATTGCGGGCAAAAGAAAACCGCCCGAAGGCGGTTTGTCGGTATATAAACTGATTAAGATCCTACATCGCAAAAAATTCCTTGAGGTGGGTTAAATTATTGAAGTACCTCAATTAGTTTAGTGGCAGTTTCCTTTTCGCGAGGTAATAACATTGTTTTCTTTAGAATATAACTAGGAAACTTCTCTTTTAAGTAGATATTTTTAAACCATTTCCTAAATTCACCTAAGCTAGAGTCAGGATATGCATTAATTTGTTGTGGATTTGAACCTGATTGCAAAAATTCTTCAGGATAAAAATGTGAACATTTTTTTAGGTCGCCATATTGGTTAGCGAGTTTATTTTCTTTCCAGTACTTAGCCCATCCTAATCCTA  >  1/1321449‑1321921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑