Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,416,649 +T intergenic (+84031/+170484) unknown → / ← unknown tRNA‑Met‑CAT/tRNA‑Val‑GAC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,416,6481.T100.0% 118.4 / NA 36intergenic (+84030/+170485)unknown/unknowntRNA‑Met‑CAT/tRNA‑Val‑GAC
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (20/16);  total (20/16)

GTGAAGAAATCGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTA‑TATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAATCATAACGGTAGCCAATTCGGTTCCTGGC  >  1/1416413‑1416874
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  
gTGAAGAAATCGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATc                                                                                                                                                                                                                              <  1:611922/243‑1 (MQ=255)
gTGAAGAAATCGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGtt                                                                                                                                                                                                                       >  1:64488/1‑250 (MQ=255)
 tGAAGAAATCGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTc                                                                                                                                                                                                                      <  1:288813/250‑1 (MQ=255)
          cGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGAt                                                                                                                                                                                                              >  1:561012/1‑249 (MQ=255)
                  aaaaaaGTCGGTAAACAGGCGGAAAAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAAAAAAATGAAAGAACATTGATATAACAACCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTc                                                                                                                                                                                                    <  1:737566/250‑1 (MQ=255)
                                                                 aCGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAAc                                                                                                                                                                                <  1:663293/224‑1 (MQ=255)
                                                                                               gATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCtt                                                                                                                       >  1:872490/1‑251 (MQ=255)
                                                                                                       aTCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTc                                                                                                                                                                                                                      >  1:824891/1‑148 (MQ=255)
                                                                                                                         cTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTc                                                                                                                                                                                                         <  1:880380/143‑1 (MQ=255)
                                                                                                                         cTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAAc                                                                                                                                                                                >  1:77781/1‑168 (MQ=255)
                                                                                                                         cTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTa                                                                                                            <  1:866680/236‑1 (MQ=255)
                                                                                                                         cTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTaaa                                                                                             >  1:780165/1‑251 (MQ=255)
                                                                                                                         cTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTaaa                                                                                             >  1:691544/1‑251 (MQ=255)
                                                                                                                          tATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAaag                                                                                            <  1:114305/251‑1 (MQ=255)
                                                                                                                           aTTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCttat                                                                                                                                                        <  1:99612/190‑1 (MQ=255)
                                                                                                                                        gattAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTc                                                                                                                                                                                                    >  1:158878/1‑133 (MQ=255)
                                                                                                                                        gattAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAAt                                                                                                                                                                                          <  1:655606/143‑1 (MQ=255)
                                                                                                                                                      aaCTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGaaa                                                                                                                                                                        <  1:256993/147‑1 (MQ=255)
                                                                                                                                                            gATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTta‑ttat                                                                                                                                                                                                                                <  1:822313/84‑4 (MQ=255)
                                                                                                                                                             aTTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAAt                                                                                                                                                                                          <  1:229531/122‑1 (MQ=255)
                                                                                                                                                                 aCTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAAt                                                                                                                                                                                          >  1:572843/1‑118 (MQ=255)
                                                                                                                                                                 aCTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCt                                                      >  1:310245/1‑250 (MQ=255)
                                                                                                                                                                  cTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACt                                                                                                              <  1:94957/193‑1 (MQ=255)
                                                                                                                                                                  cTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCa                                                    >  1:677299/1‑251 (MQ=255)
                                                                                                                                                                     tAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAAt                                                 <  1:718607/251‑1 (MQ=255)
                                                                                                                                                                     tAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAAt                                                 <  1:43991/251‑1 (MQ=255)
                                                                                                                                                                           gTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGaaaa                                           >  1:393364/1‑251 (MQ=255)
                                                                                                                                                                           gTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGaaaa                                           >  1:436531/1‑251 (MQ=255)
                                                                                                                                                                               tGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTc                                                                                                                                                                                                         >  1:187786/1‑89 (MQ=255)
                                                                                                                                                                                gTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAAt                                                                                                                                                                                          <  1:472015/103‑1 (MQ=255)
                                                                                                                                                                                      aCCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATg                                                                                                                                                                                                                          >  1:216628/1‑65 (MQ=255)
                                                                                                                                                                                         aTACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTaagtaa                                                                                                       >  1:642926/1‑177 (MQ=255)
                                                                                                                                                                                              gAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTc                                                                                                                                                            >  1:188184/1‑119 (MQ=255)
                                                                                                                                                                                                gCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAATCATAACgg                      >  1:692296/1‑251 (MQ=255)
                                                                                                                                                                                                     aaTTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAATCATAACGGTAGc                  >  1:394576/1‑250 (MQ=255)
                                                                                                                                                                                                                    aTTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAAt                              >  1:201781/1‑223 (MQ=255)
                                                                                                                                                                                                                    aTTGCTTTTTGAGCCTTCTTTTTATTATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAATCATAACGGTAGCCAATTCGGTTCCTGGc  <  1:183859/251‑1 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                  
GTGAAGAAATCGTTATTACAAAAAGTCGGTAAACAGGCGGAAGAAAGTGCCGATAATATTGCTTTACGTTGGCTTAAGAAAAATGAAAGAACATTGATATAACATCCTATTTTTTTCGATTCTATTTATACAGATTGATTAAAAATAGAAAACTCGGATTTACTTTAATCCGTTTTGTAATTACCATACGGAGCTGAAATTGAAGTTGCACTATTGCTTTTTGAGCCTTCTTTTTA‑TATATCTATGGTTCCTTTGGATTGTTCTACTCACCTAAAAATAAGGTAAAACAGATGAAATTATCACATTTCTTATTATCTGCAATCGCAGCGGCAACTCTTGTTGCTTGTGGTAACTTAAGTAAAGTATCTAAAGAAGGTACTCCTGCCGAAGGTTCTGAATTAGTATGGCCTCAAATTGAAAAATCTACATTTAATCATAACGGTAGCCAATTCGGTTCCTGGC  >  1/1416413‑1416874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑