| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 674,021 | T→C | intergenic (+176468/‑25322) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 674,021 | 0 | T | C | 100.0% | 223.2 / NA | 79 | intergenic (+176468/‑25322) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/40); total (39/40) | |||||||||||
CATTTATTCGCCAAAATTAAATAAGATCGTTTTAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGTTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGATGCTACCAAG > 1/673776‑674257 | cATTTATTCGCCAAAATTAAATAAGATCGTTTTAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAGTTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTg > 1:299102/1‑249 (MQ=255)cATTTATTCGCCAAAATTAAATAAGATCGTTTTAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCtgcttgct < 1:832401/251‑1 (MQ=255) cGTTTTAAAAGATTTCAAGGGTAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTccacc < 1:321286/251‑1 (MQ=255) ttttAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGAc < 1:309233/239‑1 (MQ=255) ttttAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCcaccac < 1:477459/251‑1 (MQ=255) gATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCg > 1:241727/1‑251 (MQ=255) aTTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTc < 1:292692/249‑1 (MQ=255) tttCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGAc > 1:374701/1‑229 (MQ=255) aaGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCgaag < 1:802139/251‑1 (MQ=255) aaaaTGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGACCTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCg < 1:734029/251‑1 (MQ=255) aTTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCaaa < 1:779708/251‑1 (MQ=255) ttGCCTATTGATTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAACCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGAc < 1:793277/251‑1 (MQ=255) ttGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGAc < 1:438457/251‑1 (MQ=255) ttGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAACGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGAc < 1:505140/251‑1 (MQ=255) ccTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACggg > 1:600785/1‑251 (MQ=255) ggCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGa > 1:702950/1‑223 (MQ=255) gCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGcc > 1:512872/1‑169 (MQ=255) cTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCa > 1:478613/1‑251 (MQ=255) cTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCa > 1:770834/1‑251 (MQ=255) ggTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGtt > 1:185151/1‑251 (MQ=255) cGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATc < 1:378782/251‑1 (MQ=255) ccTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATcc < 1:802159/250‑1 (MQ=255) aTTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATg > 1:207422/1‑250 (MQ=255) ttttCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCg < 1:561242/251‑1 (MQ=255) acaTGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGc < 1:820267/251‑1 (MQ=255) aaaTTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTaa < 1:490798/251‑1 (MQ=255) gTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATc > 1:686485/1‑220 (MQ=255) gTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGaaa > 1:796243/1‑251 (MQ=255) agaACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCcaccac < 1:416021/139‑1 (MQ=255) gaACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCgg > 1:213379/1‑251 (MQ=255) aaCATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGt < 1:204592/251‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGcc < 1:856466/112‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCg < 1:549266/155‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGa < 1:205391/165‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGACATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGa > 1:498881/1‑251 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTggg < 1:772519/225‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAag < 1:593429/239‑1 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGa > 1:326779/1‑251 (MQ=255) cATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGCGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAag > 1:615256/1‑239 (MQ=255) ttATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAggg > 1:287041/1‑240 (MQ=255) ttATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAg > 1:82356/1‑251 (MQ=255) aTTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGt > 1:107751/1‑250 (MQ=255) aTTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGt > 1:220280/1‑250 (MQ=255) gTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCaaa > 1:273764/1‑251 (MQ=255) gTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTAAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCaaa > 1:771098/1‑251 (MQ=255) gTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTCTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCg < 1:445505/213‑1 (MQ=255) atatTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGa > 1:404539/1‑251 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTccac < 1:694958/112‑1 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCg > 1:470657/1‑135 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCTGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTc > 1:10151/1‑236 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAagag > 1:497331/1‑221 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAagag > 1:602994/1‑221 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCaaa > 1:118419/1‑251 (MQ=255) aCCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCaaa > 1:612744/1‑251 (MQ=255) aCCTAAAAGGGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAAc < 1:288681/199‑1 (MQ=255) tAAAAGTGCGGTGCCTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAagag < 1:172252/251‑1 (MQ=255) tGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTc < 1:413002/251‑1 (MQ=255) gTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATc > 1:572329/1‑153 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAGGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGa > 1:778096/1‑226 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGcc < 1:648999/155‑1 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTg > 1:758538/1‑200 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGaa > 1:688850/1‑251 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGaa > 1:28883/1‑251 (MQ=255) gCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGaa > 1:465295/1‑251 (MQ=255) cTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAg > 1:237062/1‑251 (MQ=255) cACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAag < 1:330849/251‑1 (MQ=255) tcattcatCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAag < 1:738283/251‑1 (MQ=255) attcatCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAagag < 1:542946/251‑1 (MQ=255) catcaGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCg < 1:167986/141‑1 (MQ=255) catcaGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAAt < 1:653386/147‑1 (MQ=255) catcaGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAagag < 1:648064/182‑1 (MQ=255) tcaGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCtt > 1:781339/1‑251 (MQ=255) aaaaGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTAcc < 1:354757/251‑1 (MQ=255) aaaaGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTAcc < 1:496712/251‑1 (MQ=255) aaaaGGAAGAAAAAATGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTAc < 1:232091/250‑1 (MQ=255) aaaTGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGAt < 1:774475/251‑1 (MQ=255) aaaTGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGAt < 1:774843/251‑1 (MQ=255) aaaTGAAATCATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGAt < 1:146301/251‑1 (MQ=255) cATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTAcca > 1:755567/1‑231 (MQ=255) cATTAAAATCGCTGCTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGATGCTACCAAg > 1:400689/1‑251 (MQ=255) | CATTTATTCGCCAAAATTAAATAAGATCGTTTTAAAAGATTTCAAGGGAAAAATGCAAAAATTTTCATTTTGCCTATTGACTTTTCGGGCTTGATAGGTTTCGCCTCATTTGAACTTTTCACATGAAATTTTGTTCTAACGAGAACATTTATTGTATATTTTGTTACCTAAAAGTGCGGTGCTTTTTCACCGTGTTTTTTCATTCATCAGAAAAGGAAGAAAAAATGAAATCATTAAAATCGCTGTTTGCTGTAGCCGTCGTGATGACCGTTTCCACCACCGTATTCGCCGAAGAAAGCGTGTTCACGGAAGTCAAAGACGGGGCGAAATCCGCCTGGCAAACCGTTAAATCCGATGCCAAAACCGTGGGCGGTAAAGTGAAAGAGGGCGCGGTGAAAGTCAAAGACGCGACCAAAGAGAAATTCGTTGAAGCGAAAGAGGCGACTAAAGAGACCTTTACCAAAGCCAAAGATGCTACCAAG > 1/673776‑674257 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |