| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 644,295 | C→T | intergenic (+146742/‑55048) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 644,295 | 0 | C | T | 100.0% | 233.0 / NA | 82 | intergenic (+146742/‑55048) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (33/49); total (33/49) | |||||||||||
GTATTATCGTGGAAAAACCGTTCGGTTATGACCGCAAAACCGCCGAAGCGCTGGATATTCAAATTCACCGCTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTCGTATTGCGCTTCTCCAACGGCT‑GGTTTGAACCGCTTTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCCATTGGCGTGGAAGAGCGCGGCGGCTATTATGACGGTTCCGGTGCCATGCGCGATATGTTCCAAAACCACTTATTGCAAGTGCTTGCCATGGTGGCGATGGAGCCGCCGGCGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTACATTGTTTGCGCCCGCTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGCGAAGTGGACGGCG > 1/644072‑644533 | gtcttatTGTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAagag > 1:280514/4‑239 (MQ=255)gtcttatTGTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAACCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCtat > 1:451319/4‑251 (MQ=255) attgTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGa < 1:876575/248‑1 (MQ=255) ttgTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGAc < 1:692766/249‑1 (MQ=255) tgTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACg < 1:122547/250‑1 (MQ=255) gTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACgg > 1:567534/1‑251 (MQ=255) gTGGAAAAACCGTTCGGTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTAGTATGACgg > 1:399879/1‑251 (MQ=255) ggTTATGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATgcg > 1:695239/1‑251 (MQ=255) aTGACCGTGAAACCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGgcgcgatgcgcgat < 1:552059/251‑1 (MQ=255) tgaaaCCGCCGAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTcc < 1:545137/249‑1 (MQ=255) ccgccgAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAAc < 1:128263/251‑1 (MQ=255) ccgccgAAGCGCTGGATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAAc < 1:867695/251‑1 (MQ=255) gATATTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAg < 1:258809/250‑1 (MQ=255) atatTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGatat > 1:652432/1‑226 (MQ=255) atatTCAAATTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTg > 1:205394/1‑251 (MQ=255) aaaTTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCtggca < 1:336284/251‑5 (MQ=255) aaaTTCACCGTTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGGGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCtggca < 1:448466/251‑5 (MQ=255) tcttTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTAttac < 1:800911/228‑3 (MQ=255) aagaaCATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAgccg < 1:112384/251‑1 (MQ=255) cATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGatat > 1:687001/1‑197 (MQ=255) cAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGAt < 1:180786/251‑1 (MQ=255) tttACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATc < 1:548167/251‑1 (MQ=255) tttACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATc < 1:240138/251‑1 (MQ=255) ttACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCtggcaa > 1:657273/1‑216 (MQ=255) cGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGc < 1:629919/251‑1 (MQ=255) gTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGc > 1:437226/1‑250 (MQ=255) gTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGCTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGc > 1:194740/1‑250 (MQ=255) gTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTCCCGGCGCGACGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGAGATTATCAACGc > 1:211925/1‑250 (MQ=255) cGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAAtt < 1:809899/251‑1 (MQ=255) cTTGGTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGa > 1:89783/1‑251 (MQ=255) ggTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGatat < 1:337107/167‑1 (MQ=255) ggTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGa > 1:612461/1‑251 (MQ=255) gTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTTGGGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGa < 1:601863/208‑1 (MQ=255) gTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATc < 1:528597/227‑1 (MQ=255) gTAAAGAAACCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGaa > 1:202902/1‑251 (MQ=255) aaaCCGTCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCg < 1:792286/251‑1 (MQ=255) tCCAAAACCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGt < 1:256544/250‑1 (MQ=255) aCCTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCAt < 1:806350/251‑1 (MQ=255) cTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTg < 1:724349/251‑1 (MQ=255) cTGCTTGTGTTGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTg < 1:463977/251‑1 (MQ=255) cttgtgttGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGttt > 1:198346/7‑251 (MQ=255) cttgtgttGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGttt < 1:779049/245‑1 (MQ=255) ttGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGcc < 1:485259/250‑1 (MQ=255) ttGCGCTTTTCCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGcc < 1:787430/250‑1 (MQ=255) ttttcCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGAc < 1:335017/248‑1 (MQ=255) tttcCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGAc > 1:605068/3‑250 (MQ=255) tttcCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGCAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGAcc < 1:443443/249‑1 (MQ=255) tcCAACGGTT‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTc < 1:37023/200‑1 (MQ=255) cggtt‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAg < 1:30297/247‑1 (MQ=255) gtt‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTAttac < 1:266038/139‑3 (MQ=255) tt‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGAc < 1:764360/249‑1 (MQ=255) tt‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACg < 1:116550/250‑1 (MQ=255) t‑GGTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGt < 1:263344/251‑1 (MQ=255) ggTTTGAGCCGTTGTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTg > 1:729660/1‑251 (MQ=255) gagccgttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCa > 1:623417/10‑251 (MQ=255) gttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAAc < 1:640870/114‑1 (MQ=255) gttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCAt > 1:314608/5‑247 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAagag > 1:467768/4‑66 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCACCGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAAt > 1:439940/4‑249 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGAc < 1:834690/186‑1 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGcc > 1:311244/4‑220 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAAt > 1:572456/4‑249 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATc < 1:774698/247‑1 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCt < 1:678768/248‑1 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCt < 1:868470/248‑1 (MQ=255) ttgtGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCt < 1:780644/248‑1 (MQ=255) ggAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTgg > 1:357670/1‑249 (MQ=255) gAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGgtg < 1:788018/250‑1 (MQ=255) ccGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTgg > 1:819222/1‑251 (MQ=255) aTTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATc < 1:898080/237‑1 (MQ=255) aTTTCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCt > 1:893091/1‑238 (MQ=255) tttCATTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTAGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGAc > 1:25615/1‑248 (MQ=255) aTTGATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGt > 1:601868/1‑251 (MQ=255) gATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGatat > 1:216362/1‑86 (MQ=255) gATTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCg > 1:840587/1‑250 (MQ=255) aTTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATTCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGTAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCa > 1:605839/1‑251 (MQ=255) aTTACATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGc < 1:570861/250‑1 (MQ=255) aCATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGgt > 1:787573/1‑229 (MQ=255) aCATTGAAATCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGc < 1:385250/251‑1 (MQ=255) aTCACCGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGCGAAGTGGa < 1:209583/251‑1 (MQ=255) ccGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGCGAAGTGGACGGc < 1:176008/251‑1 (MQ=255) cGGCGCGGAATCTATCGGTGTAGAAGAGCGTGGCGGCTATTATGACGGTTCCGGCGCGATGCGCGATATGTTCCAAAACCATTTATTACAAGTGCTGGCAATGGTGGCGATGGAGCCGCCGGTGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTGCATTGTTTGCGCCCGTTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGCGAAGTGGACGGCg < 1:237081/251‑1 (MQ=255) | GTATTATCGTGGAAAAACCGTTCGGTTATGACCGCAAAACCGCCGAAGCGCTGGATATTCAAATTCACCGCTTCTTTGAAGAACATCAAATTTACCGTATCGACCATTATCTTGGTAAAGAAACCGTCCAAAACCTGCTCGTATTGCGCTTCTCCAACGGCT‑GGTTTGAACCGCTTTGGAACCGTAATTTCATTGATTACATTGAAATCACCGGCGCGGAATCCATTGGCGTGGAAGAGCGCGGCGGCTATTATGACGGTTCCGGTGCCATGCGCGATATGTTCCAAAACCACTTATTGCAAGTGCTTGCCATGGTGGCGATGGAGCCGCCGGCGATTATCAACGCCAATTCCATGCGTGACGAAGTGGCGAAAGTGCTACATTGTTTGCGCCCGCTGACCCAGGAAGACGTGGAGCATAATCTGGTGTTGGGACAATATGTCGCAGGCGAAGTGGACGGCG > 1/644072‑644533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |