| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 639,473 | A→G | intergenic (+141920/‑59870) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 639,473 | 0 | A | G | 100.0% | 240.4 / NA | 86 | intergenic (+141920/‑59870) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/48); total (38/48) | |||||||||||
GTTTCGCCTTTAGCCATCGATTAGCGCATTCGGCGGCAGCAACCAATCCTCCTGCCATCATGATAATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCACCCAAATTAGGCACCCAGGTTTCCGGTGTGAAAATAAGGAACGACAAGGTAACGATGGACATCCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCAGATACCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACCTAAAAACGGACTATTAGATACAAAATGCGCAATGCCGTCAG > 1/639230‑639715 | gTTTCGCCTTTAACCACCGATTTGCACATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCg > 1:529284/1‑251 (MQ=255) caccGATTTGCACATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa < 1:502518/248‑1 (MQ=255) caccGATTTGCACATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa < 1:645101/248‑1 (MQ=255) caccGATTTGCACATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa < 1:223523/248‑1 (MQ=255) accGATTTGCACATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATaaa < 1:496076/249‑1 (MQ=255) atttgcacATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGTGACCGGATGCCGGCTAAg > 1:75073/8‑238 (MQ=255) tgcacATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGTCATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATgg < 1:424952/247‑1 (MQ=255) acATTCGGCGGCGGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTa < 1:135886/250‑1 (MQ=255) cggcggcggCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATc < 1:259411/251‑1 (MQ=255) cggcggcggCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATc < 1:383170/251‑1 (MQ=255) gcggcgGCAACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCa < 1:190108/250‑1 (MQ=255) gcaACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCAc < 1:29983/250‑1 (MQ=255) gcaACCAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCAc < 1:90133/250‑1 (MQ=255) cAATCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGataa < 1:208976/251‑1 (MQ=255) aTCCTCCTGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGataata > 1:733344/1‑251 (MQ=255) ctcctGCTATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCAt < 1:111918/235‑1 (MQ=255) ctcctGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATaa < 1:825300/251‑1 (MQ=255) tcctGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAag < 1:593482/251‑1 (MQ=255) ctGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAagag < 1:508228/251‑1 (MQ=255) tGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAgg < 1:202298/251‑1 (MQ=255) tGCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAgg < 1:578889/251‑1 (MQ=255) gCCATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGc < 1:786710/200‑1 (MQ=255) ccATCATGATGATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGc < 1:692945/250‑1 (MQ=255) gatgatatCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAAtata > 1:379686/5‑237 (MQ=255) atgatatCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAgg > 1:747740/4‑250 (MQ=255) atgatatCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAg < 1:442243/247‑1 (MQ=255) tgatatCTTTAATAACCAGCCGCCCTGCCGCAGATAAATACGGGAAACCATTATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATCAGGCACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTACTAACCCAATGGTTCCCATCATTGCACCGATCCTATAAGAGGCGGTGTCAGTg > 1:706946/3‑251 (MQ=255) tgatatCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTg < 1:419155/249‑1 (MQ=255) atCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGt > 1:810940/1‑251 (MQ=255) atCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGt > 1:325706/1‑251 (MQ=255) cTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTa > 1:152397/1‑186 (MQ=255) cTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGc < 1:97873/246‑1 (MQ=255) cTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGtt > 1:797441/1‑250 (MQ=255) cTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTc < 1:288551/251‑1 (MQ=255) ttgataaCCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAATTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCAc < 1:835790/214‑1 (MQ=255) ttAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa > 1:244570/1‑194 (MQ=255) ttAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATgg < 1:65531/202‑1 (MQ=255) ccAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGc < 1:408692/251‑1 (MQ=255) gccCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTc > 1:415875/1‑250 (MQ=255) aGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTca > 1:865879/1‑251 (MQ=255) gATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGc > 1:83822/1‑234 (MQ=255) gATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTca > 1:298877/1‑250 (MQ=255) taaataaGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAAt < 1:699681/183‑1 (MQ=255) taaataaGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTcacca > 1:146696/1‑251 (MQ=255) taaataaGGGAAACCATAATTCGGCGTTGGAAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTAAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGc > 1:143396/1‑218 (MQ=255) aaataaGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa < 1:310264/167‑1 (MQ=255) aaataaGGGAAACCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTcacc > 1:42915/1‑249 (MQ=255) aaataaGGGAAACCATAATTCGGCGTTAGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATc < 1:81425/183‑1 (MQ=255) aaCCATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTAccc < 1:17672/251‑1 (MQ=255) ccATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTtaataa > 1:406823/1‑155 (MQ=255) ccATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCAc < 1:373036/178‑1 (MQ=255) ccATAATTCGGCGTTGGTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAAtata < 1:239613/188‑1 (MQ=255) ggTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAag > 1:34276/1‑175 (MQ=255) ggTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAg > 1:861986/1‑251 (MQ=255) gTAAATCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAgg < 1:376496/177‑1 (MQ=255) aTCACCGCCCAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAAAGGCGGTGTAAGTg > 1:429882/1‑184 (MQ=255) accgcccAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATAtt < 1:316036/247‑1 (MQ=255) ccgcccAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATAtt > 1:766896/4‑250 (MQ=255) ccgcccAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTc < 1:257230/248‑1 (MQ=255) ccgcccAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTc < 1:225790/248‑1 (MQ=255) gcccAAATTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTC‑CCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCttt > 1:819370/2‑251 (MQ=255) aaaTTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCa > 1:843808/1‑250 (MQ=255) aaaTTAGGCACCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCa > 1:864439/1‑250 (MQ=255) aCCCAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGc > 1:466884/1‑250 (MQ=255) cccAGGTCTCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGc > 1:501607/1‑249 (MQ=255) ggtctCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTg < 1:51838/127‑1 (MQ=255) ggtctCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAgg < 1:155755/145‑1 (MQ=255) ggtctCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGc > 1:685275/5‑175 (MQ=255) ggtctCCGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGt > 1:857948/5‑251 (MQ=255) ccGGTGTGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCAc < 1:829159/232‑1 (MQ=255) gtgtGAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTc < 1:563262/223‑1 (MQ=255) gtgAAAATAAGGAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCAcc > 1:119669/1‑228 (MQ=255) gAACGACAAAGTGACGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCAttt > 1:635152/1‑235 (MQ=255) acaaagtgaCGATGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGtt < 1:220387/242‑1 (MQ=255) aTGGACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTc > 1:239886/1‑143 (MQ=255) ggACATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGaaa > 1:393108/1‑250 (MQ=255) aCATTCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTAc < 1:188274/242‑1 (MQ=255) cGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAAc < 1:370008/251‑1 (MQ=255) aaCGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAACgg > 1:3431/1‑251 (MQ=255) cAAATAAGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAACGGACTATTAGATACaaaa < 1:867138/251‑1 (MQ=255) aGCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGt < 1:135226/180‑1 (MQ=255) gCCCAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGc > 1:193510/1‑78 (MQ=255) cAATGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAagag < 1:729189/73‑1 (MQ=255) aTGTCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAACGGACTATTAGATACAAAATGCGCAATGCCg > 1:143891/1‑251 (MQ=255) tCGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAACGGACTATTAGATACAAAATGCGCAATGCCGTCa < 1:868384/251‑1 (MQ=255) cGGCGACCGGATGCCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACTTAAAAACGGACTATTAGATACAAAATGCGCAATGCCGTCAg > 1:223234/1‑251 (MQ=255) | GTTTCGCCTTTAGCCATCGATTAGCGCATTCGGCGGCAGCAACCAATCCTCCTGCCATCATGATAATATCTTTAATAACCAGCCGCCCTGCCGCAGATAAATAAGGGAAACCATAATTCGGCGTTGGTAAATCACCACCCAAATTAGGCACCCAGGTTTCCGGTGTGAAAATAAGGAACGACAAGGTAACGATGGACATCCCGAACGTGAGCAACCCGCCAAATAAGCCCAATGTCGGCGACCAGATACCGGCTAAGGTTAATAAACCAATGGTTACAATCATTGCACCGATAATATAAGAGGCGGTGTAAGTGCCGTTCGCTTTATGCCATTCAATATTTTTCACCACCATTTTACCCTCCGGATTTTTATAAAGGGTATATTCTTTCACCAGCTCGCCTTTGTCATTTTGTACTAAATTCGATCCGTTTTTGTACAAGAAACCTAAAAACGGACTATTAGATACAAAATGCGCAATGCCGTCAG > 1/639230‑639715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |