| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 593,451 | C→A | intergenic (+95898/‑105892) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 593,451 | 0 | C | A | 95.2% | 204.7 / 1.5 | 84 | intergenic (+95898/‑105892) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (1/3); new base A (49/31); total (50/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.98e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-01 | |||||||||||
GTGTTACACCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAGTG > 1/593210‑593683 | gtgtTACACCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCAcc > 1:508477/1‑250 (MQ=255)gtgtTACACCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCAcc > 1:120071/1‑250 (MQ=255)gtgtTACACCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCAcc > 1:91608/1‑250 (MQ=255) cacCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAAc < 1:350757/251‑1 (MQ=255) ccGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAAc > 1:776019/1‑249 (MQ=255) gTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTgg > 1:329248‑M1/1‑249 (MQ=255) gATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacgga > 1:765984‑M1/1‑241 (MQ=255) aTCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggaca > 1:109894‑M1/1‑240 (MQ=255) aTCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggaca > 1:477500‑M1/1‑240 (MQ=255) aTCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggaca > 1:371620‑M1/1‑240 (MQ=255) cAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatt < 1:747661‑M1/251‑19 (MQ=255) acacCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttg > 1:656721‑M1/1‑231 (MQ=255) acacCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaa > 1:840416‑M1/1‑231 (MQ=255) aTCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtg > 1:576972‑M1/1‑226 (MQ=255) aTCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatt > 1:735215‑M1/1‑226 (MQ=255) ggTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacgga > 1:498242‑M1/1‑221 (MQ=255) gTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagatt > 1:555999‑M1/1‑220 (MQ=255) tGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtc < 1:846066‑M1/251‑37 (MQ=255) gAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCAc > 1:715642/1‑204 (MQ=255) gAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAAcc > 1:803618/1‑213 (MQ=255) gCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtctta > 1:294978‑M1/1‑212 (MQ=255) tAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc < 1:834850‑M1/251‑43 (MQ=255) tAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc < 1:570445‑M1/251‑43 (MQ=255) tAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc < 1:876‑M1/251‑43 (MQ=255) aaTTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAAcc < 1:262145/207‑1 (MQ=255) aTTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAAc > 1:601904/1‑205 (MQ=255) aTTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactctt > 1:93332‑M1/1‑207 (MQ=255) aTTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactctt > 1:195506‑M1/1‑207 (MQ=255) aTTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc > 1:103016‑M1/1‑207 (MQ=255) tAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttacc < 1:776130‑M1/251‑48 (MQ=255) gATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcag < 1:559060‑M1/225‑29 (MQ=255) ggATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaa > 1:261979‑M1/1‑180 (MQ=255) ggATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaa > 1:792303‑M1/1‑180 (MQ=255) ggATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaa > 1:163099‑M1/1‑180 (MQ=255) ggATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaa > 1:211211‑M1/1‑180 (MQ=255) ggATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgagg > 1:420304‑M1/1‑180 (MQ=255) gATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaac < 1:98741‑M1/250‑72 (MQ=255) gATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaac < 1:470985‑M1/250‑72 (MQ=255) aTTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacag < 1:699774‑M1/251‑74 (MQ=255) aTTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacgga > 1:528774‑M1/1‑178 (MQ=255) gATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaa > 1:896379‑M1/1‑172 (MQ=255) aTCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccg > 1:492406‑M1/1‑171 (MQ=255) aTCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccg < 1:625345‑M1/251‑81 (MQ=255) gCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtc > 1:826896‑M1/1‑165 (MQ=255) gCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtc < 1:133237‑M1/201‑37 (MQ=255) ccTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggat < 1:711596‑M1/251‑89 (MQ=255) ccTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattat > 1:711461‑M1/1‑163 (MQ=255) ccTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatt > 1:524890‑M1/1‑163 (MQ=255) gAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGc > 1:31167/1‑148 (MQ=255) gAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggatttt > 1:385843‑M1/1‑160 (MQ=255) gcggcAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggattttggt < 1:891314‑M1/250‑95 (MQ=255) cAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtc < 1:198295‑M1/175‑37 (MQ=255) aaaTTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc > 1:764254‑M1/1‑138 (MQ=255) aaTTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggattttggtatccgtgaggtggcgaaact < 1:211689‑M1/251‑115 (MQ=255) cacCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAGGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGtt > 1:275174/1‑251 (MQ=21) cacCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGtt > 1:215795/1‑251 (MQ=21) ccGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggac > 1:637189‑M1/1‑118 (MQ=255) gCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggattttgg > 1:665739‑M1/1‑106 (MQ=255) gCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTAt > 1:341581/1‑251 (MQ=21) aaaTGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGa < 1:56730/251‑1 (MQ=18) ggCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcacc < 1:464158‑M1/173‑80 (MQ=255) ggCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGcc < 1:130955/249‑1 (MQ=18) ggCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCtt > 1:858432/1‑251 (MQ=18) gCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacgga < 1:195040‑M1/102‑10 (MQ=255) cTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatt < 1:854073‑M1/110‑19 (MQ=255) cacaCCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGcc > 1:68607/1‑243 (MQ=18) acacCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGaa < 1:580042/251‑1 (MQ=18) cTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggattttggta < 1:728117‑M1/172‑96 (MQ=255) tCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggattttggtatccgtgaggtggcgaaacttcatcag > 1:110595‑M1/1‑75 (MQ=255) tCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAAt > 1:26391/1‑251 (MQ=17) cTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAAcc < 1:254574/251‑1 (MQ=14) cTAAAAACGCTGCATTTTCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAAcc < 1:427356/251‑1 (MQ=14) aatttcaaCCGCACTTTGCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAGAAATTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCTGAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAGTg < 1:688941/244‑1 (MQ=2) aatttcaaCCGCACTTTGCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAGAAATTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCTGAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAGTg < 1:336185/244‑1 (MQ=2) ttCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAAt < 1:828780/251‑1 (MQ=11) ttCCGACCGCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAAt < 1:185103/251‑1 (MQ=11) gCACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactcttaccaatttcgtttaaaaactatcaaacaggtcaccgagcaggat > 1:300011‑M1/1‑26 (MQ=255) gCACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTtatat > 1:503364/1‑222 (MQ=11) cACTTTGATCTGCACCCCAAAACCTggacacggacacctaatttgaggtgcagattatgtcttactc < 1:273890‑M1/67‑43 (MQ=255) cACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAAccc < 1:9422/227‑1 (MQ=1) cACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAg > 1:516002/1‑244 (MQ=1) cACTTTGATCTGCACCCCAAAACCTGGACACGGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTACAAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCAGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGCAAGAGGGCTTAAt > 1:190524/1‑201 (MQ=255) ttGCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAGAAATTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCTGAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATgg < 1:325746/193‑1 (MQ=255) gCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAGAAATTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCTGAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAg > 1:256004/1‑232 (MQ=255) | GTGTTACACCGTTTACGCGATCAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTAGATCTCGGCCCTGAAGGCGGCAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCCCGCTTCCTCAAAGAGATTTTGGCAAAAGGCTAAAAACGCTGCATTTTCCGACCGCACTTTGCTCTGCACCCCAAAACCT‑‑‑‑‑‑GGACACCTAATTTGAGGTGCAGATTATGTCTTACTCTTATCAATTTCGTTTAAAAACTATCAAACAGGTCACCGAGCAGGATTTTGGTATCCGTGAGGTGGCGAAACTTCATCAGATTTCTCGTTCTCAAGTCATTTATTGGAAAAGCCTTTCGTGAAAGAGGGCTTAATGGCGTAAAATCCCCTTATATAAACCCTCAACGCCCTAAAATAGTG > 1/593210‑593683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |