| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 574,574 | A→G | intergenic (+77021/‑124769) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 574,574 | 0 | A | G | 96.3% | 199.1 / ‑5.2 | 82 | intergenic (+77021/‑124769) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (3/0); new base G (32/46); total (36/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.67e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
GGTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACACCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACAAAAGATTCG > 1/574339‑574814 | ggTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTcac < 1:446021/250‑1 (MQ=255)ggTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTcac < 1:122829/250‑1 (MQ=255)ggTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTcac < 1:900966/250‑1 (MQ=255)ggTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTcac < 1:844132/250‑1 (MQ=255) cTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTg < 1:9799/250‑1 (MQ=255) cTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAAGCTTGCAGCTGAATAAAATACGTAAAACCCAAGCCCTTTACAGCG‑CCAAAcag > 1:544097/1‑248 (MQ=255) cTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCACTTCTGTACAGGCCTTCAGCTGGAAAAAATACGTAACACCCAAGCCTTTTCCAACG‑Caaaaaat > 1:242414/1‑247 (MQ=255) tattaATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGGATTTTACCACAAGCTTGCCGCTGAATAAACTGCGTAAAGACAATGCCTTTTACAGCG‑GAAAACTG‑C‑ttt > 1:882438/1‑251 (MQ=255) aaTGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGt < 1:734147/251‑1 (MQ=255) aaTGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGt < 1:189396/251‑1 (MQ=255) aaaCAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAAtt < 1:131051/250‑1 (MQ=255) ttCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCATTTTAGTATAGGCCTTCCGCTGAATAAAATCCGTAAAACCAAACCCCTTCCCAGCG‑CAAAAATG‑C‑TTTTTGTCGGCCCGGATTaaattctttt > 1:81037/1‑243 (MQ=255) gCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGCGGGGTC‑TTTTAGTAAAAGCTTTCAGCTGAATAAAATTCGGAACGTCAAAGCCTTTTCCAATG‑CAAAACAG‑C‑TTTTTGTCGGCACGAAATAACttccgcaaagaa > 1:354160/1‑240 (MQ=255) gCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCATTTTAGTACAGGCTTGCAGCTTAATAAAACGCGTAACGCCAACGCCCTTCACAACG‑CAAAACTG‑C‑TTTTTGTCGGCCCGAAATAAATCGCGT‑AAAGaa > 1:779627/1‑251 (MQ=255) gCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCATTTCAGTACAGGGTTGCAGCTGGATAAAACGCGGAACGCCAATGCCCTTTACCGCG‑CCAAAAAG‑C‑TTTTTGTCGGCCCGAATTAACTcccggaaaaaa > 1:611/1‑241 (MQ=255) tAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTAGTACAGGCTTTCCGCTGAAAAAACTTCGTAACGCCAAAGCCTTTCACAGCG‑CAAAAATG‑C‑TTTTTTTCGGCACGAATTAAATCCCGT‑AAAGaaaca > 1:350702/1‑248 (MQ=255) tAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTAGTACAAGCTTGCAGCTGAATAAAATGCGGAACCCCAATGCCTTTCACAGCG‑CAAAAATG‑C‑TTTTTGTCGGCACGAAATAACTCCCGT‑AAAg > 1:498287/1‑246 (MQ=255) aTCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCATTTTAGTAAAGGCTTGCAGCTGAATAAAATGCGTAAAGCCAAAGCCTTTTACAGCG‑CAAAAATG‑C‑TTTTGGGCGGCACGAAATAACACGCGG‑AAAGAAACaaa > 1:255718/1‑251 (MQ=255) tCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCaaaa < 1:502845/251‑1 (MQ=255) gCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGt < 1:299084/250‑1 (MQ=255) gATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTCGTAAAAGCTTTCCGCTGAATAAACTGCGTAACGCCAAAGCCCTTCACAGCG‑CCAAACTG‑C‑TTTTTGTCGGCACGAATTAAATCTCGT‑AAAAAAACAAAAAGTTg > 1:295943/1‑250 (MQ=255) ccAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTc < 1:794241/251‑1 (MQ=255) gAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCCGAATAAAATGCGTAAAGCCAAAGCCCTTCCCAGCG‑CAAAAATGCC‑TTTTGGT‑GGCACGAAATAACACGCGC‑AAAAAAACaaaaagattcaaaacaattttttat > 1:855487/1‑230 (MQ=255) aaaGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAAc < 1:204736/251‑1 (MQ=255) cACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCa < 1:145573/251‑1 (MQ=255) ccATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGAt < 1:51300/242‑1 (MQ=255) aTAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCGCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCAc < 1:448328/251‑1 (MQ=255) aaTTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGc < 1:482387/251‑1 (MQ=255) aaTTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTCAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGc < 1:441945/251‑1 (MQ=255) atatTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTcc < 1:68051/251‑1 (MQ=255) atatTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAAGCTTGCAGCTGAATAAAATGCGGAAAGCCAAAGGCTTTCACAGAG‑CAAAACTG‑C‑TTTTTGTCGGCACGAATTAAATCGCGT‑AAAGAAACAAAAAGTTGCAATACATTTTTTGATAAATGCATCACCGGGCAGACCTTTATTc > 1:769381/1‑250 (MQ=255) tGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAAc < 1:55637/154‑1 (MQ=255) gCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAAt < 1:158867/192‑1 (MQ=255) gCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGGCATTTTAGTAAAGGGTTGTCGCTGAATAAAATACGTAACGCCAAAGCCTTTTACAACG‑CAAAAATT‑CTTTTTGGT‑GGCACGAATTAAATCCCCT‑AAAGAAACAAAAAGTTTCCATACATTTTTTTGTAACTTCATCACCGGGGCGTCCTTTATTCCCCTACGCaaa > 1:62575/1‑251 (MQ=255) cTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTcac < 1:437187/132‑1 (MQ=255) gTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTAGTACAGGCTTGCAGCTGAATAAAATGCGGAAAGCCAAAGCCTTTTACAGCG‑CAAAACTG‑C‑TTTTTGGCGGCACGAATTAACTCCCGT‑AAAAAAACAAAAAGTTTCAATACATTTTTTGATAACTGCATCACCCGGCAGTCCTTAATTCCCCCACGCaaaaaaaacgc > 1:359468/1‑244 (MQ=255) aCATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCGCGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCTCCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGt < 1:136735/251‑1 (MQ=255) cATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGtt < 1:819693/251‑1 (MQ=255) ggTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTAGTACAGGCTTTCAGCTGAATAAACTGCGTAAAGCCAATGCCCTTTACAGCG‑CCAAAATG‑C‑TTTTTGTCCGCACCAAATAAATTGCGTAAAAAAACCAAAA‑GTTGCAAAACATTTTTCGATAAATGCATTAACCGGCAGTCCTTAATTTCCGTACGCAAAAAAATCGCCAATAATTCATCGTCCGCCaaaa > 1:802271/1‑250 (MQ=255) tGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTAtt < 1:459254/250‑1 (MQ=255) tGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTAt < 1:463847/249‑1 (MQ=255) ggTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTAtttt < 1:502239/250‑1 (MQ=255) ggTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTAtttt < 1:135606/250‑1 (MQ=255) ctTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTTAGTACAAGCTTTCCGCTGAATAAAATGCGTAACGCCAAAGCCTTTCACCACGCCAAAAC‑G‑C‑TTTTTGTCGGGACGAAATAAATCCCGG‑AAAGAACCAAAAAGTTTCAATACATTTTTTGATAAATGCATCACCCGGCAGTCCTTAATTTCCCTACGCAAAAAAAAAGCCCAAAATTCATCGTCCGCCCAAACGGCAGCACCCCATTTTaaaaaa > 1:208375/1‑247 (MQ=255) ctTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAAt < 1:422423/184‑1 (MQ=255) ctTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAAATGCGTAACGCCCAAGCCTTTCACAGCG‑CAAAAATG‑C‑TTTTTGTCGGCACGAAATAACTCGCGT‑AAAAAACCAAAATGTTGCAATACATTTTTTTATAAACGCATCACCCGGCCGGCCTTTATTTCCCTACGCAAAAAAAACGCCAAAAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTTATAga > 1:428577/1‑250 (MQ=255) ctTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAAAAGCGGAAAGCCGATGCCTTTTACAACG‑CAAAAATG‑C‑TTTTTGTCGGGACGAAATAAATCGCGT‑AAAAAACCAAAAAGTTGCAATACATTTTTTGATAAATGCATCACCGGGCAGGCCTTAATTTCCCTACGCAAAAAAAACGCCAAAAAGTCATCGTCCGGCCAAACGGGAGCACCgcagttttataga > 1:388425/1‑239 (MQ=255) ctTTTAATTCTGCAAACAAATAACGGC‑GGGGCCTTTCAGTACAGGCTTGCCGCTGAATAAAAAGCGTAAAGCCAAAGCCCTTCACAACG‑CAAAAATC‑C‑TTTTGGTCGGCACGAAATAAATCGCGT‑AAAGAACCAAAAAGTTGCAATAAATTTTTTGATAAATGCATCACCGGGGAGTCCTTAATTTCCGTACCCAAAAAGATCGCCAATAGTTCATAGTCCGTCAAAACGGCAGCACCCCATTTTAATAga > 1:815513/1‑250 (MQ=255) ttttAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCt < 1:853965/251‑1 (MQ=255) tCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCt < 1:765603/251‑1 (MQ=255) tAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGc < 1:820898/251‑1 (MQ=255) ggTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAAt > 1:131043/1‑220 (MQ=255) ggTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAAt > 1:668236/1‑220 (MQ=255) ggTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCttcattca > 1:158734/1‑251 (MQ=255) ggTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCttcattca > 1:742476/1‑251 (MQ=255) tCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTcattcatt < 1:477358/251‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGTACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCttcattc < 1:434734/245‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAAt < 1:661130/151‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAAt > 1:141102/1‑151 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAg > 1:453949/1‑167 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCTGCACCGTATTTTAATAGc < 1:254602/218‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCAc > 1:404217/1‑204 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTAtttt < 1:186176/212‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCttcattca < 1:572349/246‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCttcattc < 1:393218/245‑1 (MQ=255) tttCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTg > 1:235736/1‑250 (MQ=255) cAGTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGc > 1:826085/1‑235 (MQ=255) gTACAGGCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGAt < 1:490721/164‑1 (MQ=255) ggCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGc > 1:6658/1‑186 (MQ=255) ggCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCAc > 1:224624/1‑194 (MQ=255) ggCTTGCAGCTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAAt < 1:219044/205‑1 (MQ=255) cTGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTaaaaa < 1:880425/248‑1 (MQ=255) tGAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGc < 1:667399/198‑1 (MQ=255) gAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGc > 1:156771/1‑217 (MQ=255) gAATAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACaaaa > 1:91975/1‑251 (MQ=255) aaTAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCAc < 1:750142/182‑1 (MQ=255) aTAAACTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACAAAAGa < 1:868942/251‑1 (MQ=255) aaaCTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTc < 1:469868/128‑1 (MQ=255) aaaCTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACAAAAGAtt < 1:643875/251‑1 (MQ=255) cTGCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACAAAAGATTCg > 1:419472/1‑250 (MQ=255) gCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTaa > 1:848038/1‑184 (MQ=255) gCGTAACGCCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATg > 1:65598/1‑207 (MQ=255) | GGTACACCATCGCTTTATTAATGGTGCCGAGAAACAGGCGTTCCTGCTTAATCAGGCGATGTTGGTTATCCAGAAAAAGCACCATAAAAATTTCCCGCTCGATATTTGCCAGCTCCGTCTGTAAGTACATTTTCACAATGTCGGTTGAAGTAAAACAGTGGGTCTCTTTTAATTCTGCAAACAAATAACGGC‑GGGTCATTTCAGTACAGGCTTGCAGCTGAATAAACTGCGTAACACCAATGCCTTTCACAGCG‑CAAAACTG‑C‑TTTTGGTCGGCACGAATTAACTCGCGT‑AAAGAACCAAAATGTTGCAATACATTTTTCGATAACTGCATCACCGGGCAGTCCTTAATTCCCGTACGCAAAAAGATCGCCAATAGTTCATCGTCCGTCAAAGCGGCAGCACCGTATTTTAATAGCTTTTCCCTTGGCATTAATGCTTCATTCATTTGCCGAACCTCTCTAAAAACAAAAGATTCG > 1/574339‑574814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |