| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 566,271 | A→G | intergenic (+68718/‑133072) | unknown → / → unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 566,271 | 0 | A | G | 100.0% | 208.2 / NA | 75 | intergenic (+68718/‑133072) | unknown/unknown | tRNA‑SeC(p)‑TCA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/34); total (41/34) | |||||||||||
GCAACGCCTGCGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAAGATATAATCAAAATAGTGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAA > 1/566031‑566493 | gCAACGCCTGCGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATc < 1:146798/250‑1 (MQ=255)gCAACGCCTGCGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATc < 1:73066/250‑1 (MQ=255) ccTGCGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAg < 1:882583/251‑1 (MQ=255) cGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAAt < 1:402541/245‑1 (MQ=255) cGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAgcga < 1:452921/250‑4 (MQ=255) cGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAgcga < 1:427635/250‑4 (MQ=255) cGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGAt > 1:59698/1‑251 (MQ=255) acacTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAAc < 1:531304/251‑1 (MQ=255) tCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATc < 1:152683/230‑1 (MQ=255) cccccAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAAt > 1:489376/1‑228 (MQ=255) cccccAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGcaca > 1:867413/1‑251 (MQ=255) ccAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGa < 1:599089/251‑1 (MQ=255) cAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGaa < 1:471265/251‑1 (MQ=255) tGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCg > 1:892435/1‑251 (MQ=255) tGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCg > 1:245259/1‑251 (MQ=255) tGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCg > 1:780210/1‑251 (MQ=255) ataataCCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAgcga > 1:392998/1‑220 (MQ=255) ataataCCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCggg > 1:311922/1‑251 (MQ=255) taCCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAgcga > 1:609835/1‑216 (MQ=255) aCCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAAt > 1:587434/1‑213 (MQ=255) cccACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGaa < 1:265747/250‑1 (MQ=255) gCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAAt > 1:516400/1‑198 (MQ=255) tGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATgg < 1:250455/251‑1 (MQ=255) tAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAgc < 1:304763/173‑2 (MQ=255) aaGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCGCCCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATaa > 1:285116/1‑235 (MQ=255) gAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGc < 1:384687/250‑1 (MQ=255) gAAACCACATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGc < 1:196446/250‑1 (MQ=255) ccTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATggg < 1:283435/233‑1 (MQ=255) atcaATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGa < 1:361616/178‑1 (MQ=255) aGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGaa > 1:565964/1‑195 (MQ=255) aGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAat > 1:151769/1‑228 (MQ=255) aGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATtgttgt > 1:24239/1‑251 (MQ=255) aGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATtgttgt > 1:473478/1‑251 (MQ=255) aGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATtgttgt > 1:195368/1‑251 (MQ=255) tGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGTACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTggg < 1:437130/251‑1 (MQ=255) gTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAg > 1:726495/1‑196 (MQ=255) gTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTgggg > 1:879609/1‑251 (MQ=255) gTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTgggg > 1:131291/1‑251 (MQ=255) gTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTgggg > 1:393547/1‑251 (MQ=255) gTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTgggg > 1:222231/1‑251 (MQ=255) cTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGCTTGTTGTCTATTTGGGGga > 1:494790/1‑251 (MQ=255) cAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGaa > 1:667678/1‑251 (MQ=255) cTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGctc < 1:614531/251‑1 (MQ=255) cTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGctc < 1:510697/251‑1 (MQ=255) cacaTCCGACTGCTCCGCCACCTCAACCACCATGCCAACCCGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATc < 1:735429/114‑1 (MQ=255) cacaTCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCt < 1:806557/223‑1 (MQ=255) acaTCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAAt < 1:889957/236‑1 (MQ=255) caTCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTggg > 1:723524/1‑251 (MQ=255) tCCGACTGCTCCGCCCCCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCGCGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCtgt < 1:381330/241‑1 (MQ=255) tCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCAt > 1:865053/1‑201 (MQ=255) aCCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGc < 1:503640/184‑1 (MQ=255) aCCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGctcc > 1:303116/1‑223 (MQ=255) ccTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGGCGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGAt < 1:44698/251‑1 (MQ=255) ccTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGctc > 1:329096/1‑222 (MQ=255) cTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACGCCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACAGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGc < 1:537142/182‑1 (MQ=255) cTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATa > 1:786387/1‑251 (MQ=255) accaccATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAggg < 1:106555/251‑1 (MQ=255) ccaccaTGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAggg < 1:841895/250‑1 (MQ=255) accaTGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATa > 1:169291/1‑251 (MQ=255) tGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTAtt < 1:530946/194‑1 (MQ=255) tGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAAt < 1:489436/251‑1 (MQ=255) gCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGc > 1:405886/1‑170 (MQ=255) cTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGt > 1:23511/1‑213 (MQ=255) cgcCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTaaga < 1:382399/251‑1 (MQ=255) ccccAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTg > 1:303591/1‑178 (MQ=255) aaaCGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATc > 1:842848/1‑60 (MQ=255) aCGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTg > 1:375051/1‑172 (MQ=255) cacaCCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTAc < 1:416800/251‑1 (MQ=255) acCCTCG‑CCCCCACGACAGCATTCAGAGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAgg < 1:804732/251‑1 (MQ=255) cccTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAAt > 1:698429/1‑192 (MQ=255) cccTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAggg > 1:4908/1‑208 (MQ=255) cccACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGAtgaatgaa > 1:22450/1‑251 (MQ=255) ccACGACAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTggggg > 1:330281/1‑155 (MQ=255) aCAGCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTggg > 1:392846/1‑148 (MQ=255) gCATTCAGCGACGCCGGCAGGATATAATCAAAATAGCGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAAt > 1:396367/1‑198 (MQ=255) | GCAACGCCTGCGACAACACTTCCCCCAAGGGCGCGTGATAATACCCCGCCGCCCACTGCAAAAACTGCCAGCTTTGCGGAGAAAATAAGGAAACCTCATCAATGCAAGCCAGCACTGTCTTCAACTGCTCCGCAGGCACATCCGACTGCTCCGCCACCTCAACCACCATGCCAACACGCTTCTGCGCCCCAAACGGCACCCACACCCTCG‑CCCCCACGACAGCATTCAGCGACGCCGGCAAGATATAATCAAAATAGTGATGTAACGGCACAGGAAGCGCAATTCGGGCAAATGACATGAACGGAAATTCAGTGAAATAAAATGGGCTCGGAATATAGCATTTTGGGGGATTGTTGTCTATTTGGGGGAGAATAGCTCTGTTGTTTGGGGTTTAATTTCACTTGGATAAGGGATAAAATACTGTCAAATTTAAGAAGCAAGAAATGCGTACAGGATGAATGAA > 1/566031‑566493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |