| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 483,879 | T→C | intergenic (‑67057/‑13584) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 483,879 | 0 | T | C | 100.0% | 232.0 / NA | 80 | intergenic (‑67057/‑13584) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑SeC(p)‑TCA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/50); total (30/50) | |||||||||||
CCGATATTCATCCAGCCTAACGCCAATAATTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATTCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAACATCATGCGTTCGCCGGCATATTC > 1/483639‑484125 | ccaatatTCATCCAGCCTAACGCCAATAATCCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc < 1:183215/248‑1 (MQ=255)ccGATATTCACCCAGCCAAACCCAAATAATGCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc < 1:174804/251‑1 (MQ=255) atatTCATCCAGCCTAACGCCAATAATTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTgg > 1:643944/1‑251 (MQ=255) atatTCACCCAGCCTACCGCCAATAATCCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTgg < 1:448856/251‑1 (MQ=255) aTCCAGCCTAACGCCAATAATTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc > 1:187053/1‑242 (MQ=255) ccaggcctaccccaaataa‑tCCAAGGGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGt < 1:545155/237‑1 (MQ=255) cccTACCGCCAATAATCCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGc < 1:223215/240‑1 (MQ=255) cGCCAATAATTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTaaaa > 1:207155/1‑250 (MQ=255) atcccAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCa < 1:691136/248‑1 (MQ=255) atTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTACGc > 1:820422/1‑250 (MQ=255) atTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGc < 1:223942/250‑1 (MQ=255) aa‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTcc < 1:73274/251‑1 (MQ=255) cgATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑c < 1:474526/251‑1 (MQ=255) cgATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑c < 1:525872/251‑1 (MQ=255) cgATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑c < 1:495538/251‑1 (MQ=255) gATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTAAGCACGCCCCGCTCaaagc > 1:487274/1‑247 (MQ=255) ggTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTgg < 1:90723/198‑1 (MQ=255) ttGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGc < 1:248635/251‑1 (MQ=255) gAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGc < 1:331351/240‑1 (MQ=255) atatCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTg < 1:332104/251‑1 (MQ=255) atCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGaa < 1:304951/251‑1 (MQ=255) gCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc < 1:818559/183‑1 (MQ=255) gCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc < 1:896311/183‑1 (MQ=255) gCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCt < 1:179097/220‑1 (MQ=255) acacTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTTTGCACGTCCCACTCAATG‑CCTTTTGCATCAAGGGCTTTTAAGGCGGCaa > 1:137512/1‑251 (MQ=255) tAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑Tc < 1:23702/251‑1 (MQ=255) tAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑Tc < 1:232113/251‑1 (MQ=255) gATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTTATTTTGAAA‑TTTACGCACGACCCGCTCAATG‑CCTTTGGCATCAAGGGGCTTGGAggcgggcaaatctttttt > 1:230318/1‑238 (MQ=255) aTTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTTCGCACGTCCCGCTCAATG‑CCCTTTGCATCAAGGGGTTTGAAGGGGGCCATA‑TCttttttg > 1:756726/1‑247 (MQ=255) aGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTAc > 1:517986/1‑163 (MQ=255) aGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGaa < 1:497951/228‑1 (MQ=255) ggCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGAt < 1:212798/249‑1 (MQ=255) gCAATTAACGGGCGTTGGGTTTGCCA‑TCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGAt < 1:538085/247‑1 (MQ=255) aaTTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTTA‑TTTTAAACTTTTCGCACGTCCAGCTCAATG‑CCTTTTGCATCAAAGGGTTTTAAGGCGGCAATA‑TCTTTTTCGTCCCCGGGTACCg > 1:679696/1‑250 (MQ=255) aTTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTTTCA‑TTTTAAAATTTTTGCACGTCCAGCTCAATG‑CCTTTTGCATCAAGGGGTTTGAAGGCGGCAATA‑TCTTTTTCGTCCACGGATACCGc > 1:460264/1‑250 (MQ=255) ggCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGc < 1:79568/195‑1 (MQ=255) ccATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTAc < 1:804264/250‑1 (MQ=255) ccATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGACGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTAcc < 1:86358/251‑1 (MQ=255) gTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAg < 1:285937/192‑1 (MQ=255) aaTCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTTAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTTTCGTCCACGGATACCGC‑CTTGGGAATCATTTTTTTTCCATCGCGATACg > 1:165845/1‑250 (MQ=255) aaTCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAAc < 1:892404/140‑1 (MQ=255) aaTCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATAc < 1:238765/249‑1 (MQ=255) aaTCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGc < 1:418606/251‑1 (MQ=255) aTCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGcc < 1:408367/251‑1 (MQ=255) tGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGccacc < 1:853374/251‑1 (MQ=255) cgccgcAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGccgccc < 1:282460/250‑1 (MQ=255) cgccgcAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGccaccc < 1:775534/250‑1 (MQ=255) ccgcAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTTTCA‑TTTTAAAATTTACGCACGTCCAGCTCAATT‑CCCTTTGCATCAAGGGGTTTTTAGGCGGCAATATTCTTT‑TCGTCCCCGGATACCGC‑CCTGGTAATCATTTTTTTTCCATCCCGATACGCCCTGccaccccc > 1:261036/1‑248 (MQ=255) gcAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTTCGCACGTCCAGCTCAATG‑CCTTTTGCATCAAGGGGTTTTAAGGCGGCAATA‑TCTTTTTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTTCCATCGCGATACGCCATGCCACCCACAtt > 1:345534/1‑251 (MQ=255) cAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACAtt < 1:541441/250‑1 (MQ=255) aaaTACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTTCGCACGTCCCGCTCAAAG‑CCTTTTGCATCAAGGGCTTTTAAGGCGGCAATA‑TCTTTGTTGTCCCCGGATACCGC‑CTTTGTAATCATTTTTTTTTCATCTCGATACGCCATGccaccccccttgt > 1:294165/1‑244 (MQ=255) aaaTACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTACGCACGTCCAGCTCAATT‑CCTTTTGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTTTCGTCCACGGATACCGC‑CTTGGTAATCATTTTTTTACCATCGCGATaa > 1:340906/1‑231 (MQ=255) aaTACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTTAACTTTACTCACGCCCAGCTCAATGTCCTTT‑GCGTCAAGGGCTTTTGAGGCGGGAATA‑TCTTTTTCGTCCACGGATAACGC‑ATTGGGTATTATTTTTTTTACATCGCGATACGCCATGCCACCCACATTGAt > 1:728750/1‑251 (MQ=255) aTACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTTAACTTTTTGCACGTCCAGCTCCAAG‑CCCTTTGCATCAAGGGGGTTTTAGGCGGCAATA‑ACTTTGTCGGCCACGGGTACCCC‑ATTGGGAAACCTTTTTTTACCCTCGCGCTACGCCATGCCACCCCCATTGATg > 1:632949/1‑251 (MQ=255) tACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATgg < 1:829877/251‑1 (MQ=255) aCCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTACGCACGTCCAGCTc > 1:506523/1‑130 (MQ=255) aCCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTaaaa < 1:529018/251‑1 (MQ=255) aaaCACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATc < 1:497265/248‑1 (MQ=255) cacCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGATGTTA‑TTTGATATTTTTATCACGGCATTCTCTATT‑CCATTGGGATCAAAGGGTTTGTAGGGGGCGATA‑ACTTTGTCTTTCCCGGGTAGCGC‑GTTGGGAATCATTTTTTTTTCATCGCGATACTCCAAGCCACCCCCATTGATGGATTTtaaaaaaacgc > 1:737345/1‑243 (MQ=255) gAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTgg > 1:27952/1‑82 (MQ=255) aatTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑ACTTTGGCATCCAGGGGTTTGAAGGCGGGAATA‑TCTTTTTCGTCCACCGGTACCGCAATTGG‑AATCATTTTTTTTTCATCCCGATAAGCCCTGCCACCCCCATTGATGGAtttgtctcttttacaaatttccc > 1:623937/1‑230 (MQ=255) tttGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGaaa < 1:544950/251‑1 (MQ=255) gTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTTAGCACGTCCAGCTCAATG‑CCTTTTGCa > 1:97481/1‑121 (MQ=255) gTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTTAGCACGTCCCGCTCAATT‑CCTTTTGCCTCAAGGGCTTTTAAAGCGGCAATA‑TCTTTTTCGTCCACGGGTACCGC‑ATTGGTAATCATTTTTTTTTCATCGCGATACGCCCTGCCCCCCACATTTATGGGTTTTAAAACAAAACCCCCCTCGGGAAGACGCaaa > 1:602715/1‑250 (MQ=255) gTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCGTTGAAGGCGGCAATA‑TCTTTTTCGTCCACGGATACCGC‑ATTGGGAATCATTTTTTTACCATCCCGGTACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCCCATCGGGAAGACGCaaa > 1:552524/1‑250 (MQ=255) aaTTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATAcgtc < 1:228840/251‑1 (MQ=255) tCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATc < 1:548555/217‑1 (MQ=255) aTTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGcc < 1:372669/179‑1 (MQ=255) aTTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTa < 1:360453/251‑1 (MQ=255) ccTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTTCGCACGTCCAGCTCAAAG‑CCTTTTGGATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTTTCGTCCCCCGATACCGC‑CTTGGGAATCATTTTTTTTCCATCGCGATACGCCATGCCACCCACATTTATGGGTTTTAAAAAAACGCCCCCATCGGGAAAACGCCAAAAGTCCGTCGGGTTGGGaaaaa > 1:788799/1‑249 (MQ=255) ccTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAAATTTTCGCACGTCCAGCTCCATG‑CCTTTTGCATCAAGGGCTTTTAAGGCGGCAATA‑TCTTTTTTGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTTCCATCGCGATACGCCCTGCCACCCACATTGATGGATTTTAAAAAAACGCCCCCATCGGGAAGACGCAAAACGCCCGTCGGATTGGTAAACa > 1:192872/1‑251 (MQ=255) ccTTTAAAGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCAt < 1:109522/215‑1 (MQ=255) aaaGTAAGTTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTTA‑TTTTAAACTTTTCGCACGGCCCGCTCAATG‑CCTTTGGCCTCAAGGGGTTTTAAGGCGGCAATA‑TCTTTTTCGTCCCCGGATAACGC‑CTTGGGAATCATTTTTTTTTCATCGCGATACGCCATGCCACCCACATTGATGGGTTTTAAATCAAAGCCCGCATCGGGAAAACGCAAAACATCCGTCGGGTTGGTaaaaaacaaa > 1:825060/1‑244 (MQ=255) taagtTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAAcat < 1:636329/249‑1 (MQ=255) taagtTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAAcat < 1:659446/249‑1 (MQ=255) gtTATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTTAAACTTTACGCCCGTCCCGCTCAATG‑CCTTTTGCATCAAGGGCTTTTAAGGGGGGAATA‑TCTTTTTCGTCCCCGGATAACGC‑CTTGGGAATCATTTTTTTTCCATCGCGATACGCCATGCCACCCACATTGATGGGTTTTAAATCAACGCCCGCATCGGGAAGACGCAATACGTCCGGCGGGTTGGGAAAAAGCAACAACATg > 1:224372/1‑250 (MQ=255) ttATTTTTCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAAcat < 1:731248/245‑1 (MQ=255) tttttCTTCAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCCCGTCCAGCTCAATG‑CCTTTTGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGGAATCATTTTTTTTCCATCGCGATACGCCATGCCACCCACATTGATGGGTTTTAAATTAAAGCCCGCATCGGaaa > 1:68367/1‑205 (MQ=255) cAATAAATCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATgg < 1:185285/170‑1 (MQ=255) aaaTCCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAACATCATGCGTTCGCCGGCATATTc < 1:540937/251‑1 (MQ=255) | CCGATATTCATCCAGCCTAACGCCAATAATTCCAA‑GGTCCCGCCGATAATGATACCGGTTTGAATATCGCCCAACACTAAGCCGATTAAGGTACAGGCAATTAACGGGCGTTGGGTTTGCCATTCGTCAAGAATCGATCCTGCGCCGCAAATACAGGCGACCAGAAACACCAGAATAATTTGTAAAGTGGTAATTTCCATAATCATTTCCTTTAAAGTAAGTTATTTTTCTTCAATAAATTCATCATGTACTGGCGGTTGTCA‑TTTGAAACTTTACGCACGTCCAGCTCAATG‑CCTTTGGCATCAAGGGCTTTGAAGGCGGCAATA‑TCTTTGTCGTCCACGGATACCGC‑ATTGGTAATCATTTTTTTACCATCGCGATACGCCATGCCACCCACATTGATGGATTTAAAATCAACGCCCGCATCGGAAAGACGCAATACGTCCGTCGGATTGGTAAACAGCAACATCATGCGTTCGCCGGCATATTC > 1/483639‑484125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |