BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	44,660	C→T	intergenic (–/+86474)	– / ← unknown	–/tRNA‑Ala‑GGC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	44,660	0	C	T	96.0%	188.8 / NA	77	intergenic (–/+86474)	–/unknown	–/tRNA‑Ala‑GGC
Reads supporting (aligned to +/- strand): ref base C (3/0); new base T (18/55); total (22/55)
Fisher's exact test for biased strand distribution p-value = 1.89e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCGGCGCCAGTGGCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCACACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTG  >  1/44415‑44899

cgcgGCGCCAGTGGCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGa                                                                                                                                                                                                                                               <  1:883551/251‑1 (MQ=255)

   gacagcAGTGGCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑t                                                                                                                                                                                                                                            <  1:235099/245‑1 (MQ=255)

       ccAGTGGCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTcc                                                                                                                                                                                                                                       <  1:75339/251‑1 (MQ=255)

             gCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGt                                                                                                                                                                                                                                  <  1:315409/250‑1 (MQ=255)

                                     tCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAGGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAata                                                                                                                                                                                                         <  1:896409/250‑1 (MQ=255)

                                                   atcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:618019/251‑1 (MQ=255)

                                                   atcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:445592/251‑1 (MQ=255)

                                                   atcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:750835/251‑1 (MQ=255)

                                                   atcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:190042/251‑1 (MQ=255)

                                                    tcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:304088/251‑1 (MQ=255)

                                                    tcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:384326/251‑1 (MQ=255)

                                                    tcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:499438/251‑1 (MQ=255)

                                                    tcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:686085/251‑1 (MQ=255)

                                                    tcggtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:163176/251‑1 (MQ=255)

                                                       gtTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGGTTTTTGATATGTTTTCGGGGGGTGGGGGAGGGAAAAAAAAAATTT‑ACCGTATGCCG‑CACCACACGGAA‑TTTTTCCAAAAGGCGGCCATGTTCGA‑TTTTAAAAATTCGCGCCCCTACA‑ccccg                                                                                                                                                                                     >  1:20360/1‑248 (MQ=255)

                                                       gtTCCAATCAGCCGGTGGTCGCGTTAGTGGACGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACAATTCTTTTTATCATTAATAATAACGGCGGGGCGCTTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTc                                                                                                                                                                                                                     <  1:399568/221‑1 (MQ=255)

                                                                 gCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGAATTTTTTTATGTTGCCGGTGGGTGCGGGAGGGAAAGAAAAAAACT‑TCCGTATGCCC‑CACCCCAAGGAATTTTTCCCAA‑TGGCGTCCCCGTTCGA‑GTTTAAATAATCGCGCCCCTCCA‑CCTCGGCGGGTTTgg                                                                                                                                                                           >  1:604443/1‑250 (MQ=255)

                                                                       ggtCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGGGGTTTTTGTTTTTTTTGCGGGGGGTGGGGGAGGGAAAGAAAAAATTT‑ACCGTATGCCG‑CCCCCCACGGAA‑TTTTTCCCAGTGGGGGCCATGTTTGG‑TTTTAAATATGTGCGCCCCTTCA‑CCTTGGCggggtttgggttcg                                                                                                                                                                     >  1:541746/1‑239 (MQ=255)

                                                                            cgTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTTTATATTTTTTCGGGGGGTGCGGGAGTGAAAAACAAAATCT‑ACCCCCTGCCGCCCCCAACCGGAA‑TTTTCCCAA‑TGGCGGCCCTGTTCGA‑TTTTAAAAATTCGCGCCCCTACA‑cccttctcttctacacaactcccag                                                                                                                                                                 >  1:681912/1‑227 (MQ=255)

                                                                              ttAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTAc                                                                                                                                                                  <  1:778286/247‑1 (MQ=255)

                                                                               tAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGaaa                                                                                                                                                             <  1:142745/251‑1 (MQ=255)

                                                                                 gTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:186272/222‑1 (MQ=255)

                                                                                  tGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAAc                                                                                                                                                            <  1:186798/249‑1 (MQ=255)

                                                                                      cGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGcc                                                                                                                                                       <  1:299464/250‑1 (MQ=255)

                                                                                           cGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGGGGTTTTTGATATTTTTCCGGGGGGTGGGGAAGGGGAAAAAAAAATCTAACCG‑ATGCCG‑CACCCTACGGAA‑TTTTTCCAAGTGGGGGCCCAGTTCTATTTTAAAAAAT‑CGCGCCCCTTCA‑CCCGGGGGGGTTTGAGGTCCGCACTGaaaaaaaactattt                                                                                                                                                  >  1:476264/1‑239 (MQ=255)

                                                                                           cGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGGTTTTTGCTATGTTGTCGGGGGGTGGGGGAGGGAAAAAAAAACTTT‑TCCCCATGCCC‑CACCCTAAGGAA‑TTTTTCCAAATGGCGGCCCTGTTTGA‑TTTTAAAAATGCGCGCCCCTTCA‑CCTGGGGGGGTTTTTGGTTCGTACTGAAACAAACCtctttt                                                                                                                                                 >  1:183630/1‑246 (MQ=255)

                                                                                              ccGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGc                                                                                                                                              <  1:418596/251‑1 (MQ=255)

                                                                                                   cTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTcc                                                                                                                                                                                                                           <  1:879236/171‑1 (MQ=255)

                                                                                                   cTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑cc                                                                                                                                                                                        <  1:355599/204‑1 (MQ=255)

                                                                                                     gTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGGGGTTTTTGTTATGTTGCCGGGGGATGGGGGAGGGGAAAAAAAAATCT‑ACCGCATGCCG‑CCCCATACGGGA‑TTTTTCCAAGTGGGGGCCCTGTTTGG‑TTTTAAAAATGCGGGCCCCTACACCCTGGG‑GGGTTTGTGTTTCGGACTGaaaaaaacccatttaccccccggag                                                                                                                                       >  1:346646/1‑229 (MQ=255)

                                                                                                            ttAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACcat                                                                                                                                <  1:808029/251‑1 (MQ=255)

                                                                                                                   cGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGtt                                                                                                                                                                                                                      <  1:425807/160‑1 (MQ=255)

                                                                                                                           ttATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAg                                                                                                                  <  1:801195/250‑1 (MQ=255)

                                                                                                                             aTTCAAAAAAATCACCCATCCGACGATACTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTGTGCCG‑CACCATAAGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCGCTTACA‑cc                                                                                                                                                                                        <  1:795139/178‑1 (MQ=255)

                                                                                                                             aTTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGccac                                                                                                                                   <  1:824258/231‑1 (MQ=255)

                                                                                                                                              aaCCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGgcagc                                                                                              <  1:78498/251‑1 (MQ=255)

                                                                                                                                                ccGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCTCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:890889/251‑1 (MQ=255)

                                                                                                                                                ccGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:654628/251‑1 (MQ=255)

                                                                                                                                                ccGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:91155/251‑1 (MQ=255)

                                                                                                                                                ccGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:352740/251‑1 (MQ=255)

                                                                                                                                                 agatgtgtataaagagacagaataataaCGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:381242/230‑1 (MQ=255)

                                                                                                                                                  gacgaTTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:827166/156‑1 (MQ=255)

                                                                                                                                                          tttttATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATaaa                                                                                  <  1:208665/251‑1 (MQ=255)

                                                                                                                                                           ttttATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATaaa                                                                                  <  1:178448/250‑1 (MQ=255)

                                                                                                                                                                  aTTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAAt                                                                          <  1:896836/251‑1 (MQ=255)

                                                                                                                                                                   ttAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATc                                                                                                                      <  1:576130/206‑1 (MQ=255)

                                                                                                                                                                    taataataaCGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:28121/138‑1 (MQ=255)

                                                                                                                                                                       taataaCGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTc                                                                                                                                                  <  1:879493/174‑1 (MQ=255)

                                                                                                                                                                       taataaCGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAAc                                                                     <  1:70851/251‑1 (MQ=255)

                                                                                                                                                                        aataaCGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACa                                                                    <  1:158309/251‑1 (MQ=255)

                                                                                                                                                                             cggcggGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATaaa                                                                                  <  1:617697/232‑1 (MQ=255)

                                                                                                                                                                                  gggCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTa                                                           <  1:191984/250‑1 (MQ=255)

                                                                                                                                                                                     cGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGc                                                        <  1:814910/250‑1 (MQ=255)

                                                                                                                                                                                         tttCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTgtcg                                                   >  1:688878/1‑251 (MQ=255)

                                                                                                                                                                                              atatGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCgg                                               >  1:887289/1‑250 (MQ=255)

                                                                                                                                                                                                         gTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTAATGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAataaataa                                    >  1:543022/1‑250 (MQ=255)

                                                                                                                                                                                                            gATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAacac                                 <  1:699883/250‑1 (MQ=255)

                                                                                                                                                                                                                      tGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGc                       <  1:175266/250‑1 (MQ=255)

                                                                                                                                                                                                                      tGAAAGACAAATTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGc                       <  1:294764/250‑1 (MQ=255)

                                                                                                                                                                                                                              aaaTTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAacac                                 <  1:420752/232‑1 (MQ=255)

                                                                                                                                                                                                                                aTTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCa            >  1:777389/1‑251 (MQ=255)

                                                                                                                                                                                                                                aTTCT‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCa            >  1:242862/1‑251 (MQ=255)

                                                                                                                                                                                                                                    t‑ACCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGAt        <  1:45996/251‑1 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTaca‑c                                                                                                                                                                                         <  1:43457/73‑1 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATaaa                                                                                  >  1:332210/1‑176 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTgtcg                                                   >  1:539372/1‑207 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATa       >  1:162865/1‑251 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATa       >  1:834055/1‑251 (MQ=255)

                                                                                                                                                                                                                                      aCCGTATGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATa       >  1:614647/1‑251 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCAc                                                                                            <  1:187587/161‑1 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTgtcgtc                                                 <  1:847581/204‑1 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTc             <  1:692085/240‑1 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTg  >  1:39683/1‑251 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTg  >  1:241208/1‑251 (MQ=255)

                                                                                                                                                                                                                                           aTGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTg  >  1:789995/1‑251 (MQ=255)

                                                                                                                                                                                                                                            tGCCG‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCCTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTg  >  1:48810/1‑250 (MQ=255)

                                                                                                                                                                                                                                                g‑CACCATACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTgtcgtc                                                 >  1:288329/1‑199 (MQ=255)

CGCGGCGCCAGTGGCATCGACGGTTTACTTGCCACCGTCGCCGGCATCGGTATCGGTTCCAATCAGCCGGTGGTCGCGTTAGTGGGCGACACGTCCGCGCTGTATGATTTAAACTCGCTGGCGTTATTCAAAAAAATCACCCAACCGACGATTCTTTTTATCATTAATAATAACGGCGGGGCGATTTTCGATATGTTGCCGGTGGATGCGGAAGTGAAAGACAAATTCT‑ACCGTATGCCG‑CACCACACGGAA‑TTTTCCCAAGTGGCGTCCATGTTCGA‑TTTAAAATATGCGCGCCCTTACA‑CCTGGGCGGATTTGAGTTCCGTACTGAAACAAGCCTATTCACGCCGTGAAGCCACCATCATCGAAATCAAAGTGGCGCCGAATGACGGCAGCACCGTTTATAAACGCCTAATCGAACAAATCAGCTATGCTGTCGTCGGCGAATAAATAACACCATCAAAAGCAAATTATTTCATGATAATTTG  >  1/44415‑44899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`