Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 2,009,363 T→C intergenic (‑16655/+31314) unknown ← / ← unknown tRNA‑Lys‑TTT/tRNA‑Ser‑TGA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*12,009,3630TC100.0% 58.6 / NA 22intergenic (‑16655/+31314)unknown/unknowntRNA‑Lys‑TTT/tRNA‑Ser‑TGA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (14/8);  total (14/8)

ATGTAGTATGCGAAAAAATATAGTAACTTAAAATACCTATCAATAAAAATTATATTTCTTATTACAAGAGATATTATACTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAATATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTACAATCAAGTTATTTTTAATAAAGAATCTCAGATTGGATTAATAATCTTGATTTTCTCT  >  1/2009167‑2009591
                                                                                                                                                                                                    |                                                                                                                                                                                                                                    
aTGTAGTATGCGAAAAAATATAGTAACTTAAAATACCTATCAATAAAAATTATATTTCTTATTACAAGAGATATTATACTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATc                                                                                                                                                                                <  1:492341/251‑1 (MQ=255)
                                                                    agaTATTATACTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATgg                                                                                                                                    >  1:259242/1‑227 (MQ=255)
                                                                      atatTATACTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCag                                                                                                          <  1:498093/251‑1 (MQ=255)
                                                                           ataCTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACg                                                                                                                                                                                                         >  1:828710/1‑151 (MQ=255)
                                                                           ataCTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATAc                                                                                                                                                                                                <  1:790091/160‑1 (MQ=255)
                                                                           ataCTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTc                                                                                                                                                                                    >  1:434992/1‑172 (MQ=255)
                                                                                              ctgcttACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTGCTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAAt                                                                                                                                                                 <  1:432370/169‑1 (MQ=255)
                                                                                                tcttACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAatat                                                                                                                                      <  1:556619/197‑1 (MQ=255)
                                                                                                        gAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTa                                                                         >  1:228568/1‑250 (MQ=255)
                                                                                                                cTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGcc                                                                 >  1:536972/1‑250 (MQ=255)
                                                                                                                  cATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATAc                                                                                                                                                                                                >  1:680513/1‑121 (MQ=255)
                                                                                                                                    aCATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACg                                                                                                                                                                                                         >  1:410812/1‑94 (MQ=255)
                                                                                                                                           ccTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTACAATCAAGTTATTTTTAATAAAg                                     >  1:839946/1‑251 (MQ=255)
                                                                                                                                             tttGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAatat                                                                                                                                      <  1:50478/152‑1 (MQ=255)
                                                                                                                                                    tCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTAc                                                           >  1:880868/1‑220 (MQ=255)
                                                                                                                                                    tCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTACAATCAAGTTATTTTTAATAAAGAATCTCAGa                            >  1:470797/1‑251 (MQ=255)
                                                                                                                                                         aGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACat                                                                                                  <  1:549643/176‑1 (MQ=255)
                                                                                                                                                                   cTTAAAAAGGATAGCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTAttatta                                                                                                                                                                                                           >  1:697995/1‑61 (MQ=255)
                                                                                                                                                                                gCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAatat                                                                                                                                      <  1:462548/117‑1 (MQ=255)
                                                                                                                                                                                gCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACat                                                                                                  >  1:498560/1‑153 (MQ=255)
                                                                                                                                                                                gCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATAtt                                                                                               >  1:852751/1‑156 (MQ=255)
                                                                                                                                                                                gCCTTTATGCTACTTATTAACATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTACAATCAAGTTATTTTTAATAAAGAATCTCAGATTGGATTAATAATCTTGATTTtctct  >  1:627687/1‑249 (MQ=255)
                                                                                                                                                                                                    |                                                                                                                                                                                                                                    
ATGTAGTATGCGAAAAAATATAGTAACTTAAAATACCTATCAATAAAAATTATATTTCTTATTACAAGAGATATTATACTATAGTCATTATCAGCTTCTTACATGAGTTGTACTCATAGAACGATAAAATAAACATAACCCTTTGTTATCACAAGACATATCACTTAAAAAGGATAGCCTTTATGCTACTTATTAATATTTTCTTTGCGTTAGCTCTATTATTACGATTTTATACTTTATCTATTTCAATCAGAAATGAAAAAAATTTACTAAAAAAAGGCGCCATACAATATGGAAAGAAAAATTCAATTGCCTTATCAGTAGTACATATTTTATTCTATCTTTCATGTATTACTGAAGCCAATTACAATCAAGTTATTTTTAATAAAGAATCTCAGATTGGATTAATAATCTTGATTTTCTCT  >  1/2009167‑2009591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑