| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,956,178 | T→G | intergenic (+21672/+36251) | unknown → / ← unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,956,178 | 0 | T | G | 100.0% | 102.4 / NA | 43 | intergenic (+21672/+36251) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (19/24); total (19/24) | |||||||||||
GTTTGCCATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCACATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑TAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATCCAACGCTTTTGTTCACATGAAAACGCAATAGCAT > 1/1955934‑1956411 | gTTTGCCATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTAt < 1:293807/250‑1 (MQ=255) ttGCCATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCta < 1:54215/251‑1 (MQ=255) ccATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCtata < 1:265736/250‑1 (MQ=255) cATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc < 1:657651/251‑1 (MQ=255) cATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc < 1:601993/251‑1 (MQ=255) cATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc < 1:251399/251‑1 (MQ=255) tttATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCAt < 1:497826/251‑1 (MQ=255) acaacaTTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc > 1:351754/1‑215 (MQ=255) aaagagccaggCTTGAGACTTTAATAGGATCCCCCCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGTTAAAACAAATAACAACAAAAATTAAAATACTGCTATCCCCCACCACAACAATCATATGCAAATATAATTTTCACCAATAAACATTTT‑AAAACAAACCTTCCGTT‑GAGTATCTATATCATAAAAAGAAGTTTTCCTGAAACCGCCATTTTTTGAAAGTGTGagat < 1:288336/241‑1 (MQ=255) aaaTACCAGTTTGAGCCGTTAATAGGTTTCCCCCAAAAAGTAACGAAAGTAGTGTTTTTTTCATATTGCTCCTCCTTTTTATCGTTTAAACAAATAACAACAAAAATTAAAATACTCCTATCCCCCCCCAAAACAATCATATGCGAATAAAAATTTCCCCAATATAAAATTT‑AAAACAAATCGTCCGTT‑GATTATCTATATAATAAAAAAAAGTTTTCCTGCAACCGCCATTTTTTGAAAGTGTGagat < 1:868719/248‑1 (MQ=255) gCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTAtt > 1:222559/1‑251 (MQ=255) ggATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc < 1:19916/178‑1 (MQ=255) cccccacAAAGAAACGCAAGTATTTTCTTTTTAATAATGCTCCTCCCTTTAATCGATTAAACAAAAAAAAACAAAAATTAAAATTCTGCTATACCCCGCCACAACAATCATATGCGAAAATAAATTTCACCAATATA‑AATTTGGAAAAAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAAATTTCCTACAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAact < 1:9863/248‑1 (MQ=255) ccaccaAAAAGAAACGAAAGTAGTTTTTTTTTCATAATGCTCCCCCTTTTTATCGGTTAAACGAAAAAAAAAAAAAATAAAAATACTGCTATACCCCCCCACAACAATCATATGAGAATATAAATTCCACAAAAAAACAATTT‑GAAACAAATCGTCCGTT‑GAGTATTTATATAATAAAAAAAAGATTTCCGGAAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAact < 1:540316/251‑1 (MQ=255) aaGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCaaa > 1:522467/1‑251 (MQ=255) aaGTAACCAAAGTGGTGTCTTTTTCATATTGCTACTCCCTTTTATCGTTTAAACGAAAAACAAAAAAAATAAAAATTCTGCTATCCCCCCCCACAACAATCATAGGCGAATATAAATTTCACAAATATACAATTA‑AAAACAAATGGCCCGGT‑GATTATCAATATCATAAAAAAAAGTTTCCCGGCAACCGCCATTTTTTGAAAGTGTGagat < 1:187939/212‑1 (MQ=255) gTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTAttt > 1:755433/1‑221 (MQ=255) aaCGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCta < 1:407293/157‑1 (MQ=255) agtagtGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTaa > 1:144002/1‑251 (MQ=255) cTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGcc < 1:582233/174‑1 (MQ=255) cTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAAtatttta > 1:78656/1‑251 (MQ=255) cccTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTAt > 1:126792/1‑122 (MQ=255) cccTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCtata < 1:451216/127‑1 (MQ=255) gaaaaacaaaAAAAATAAAAATACTGCAACCCCCCCCAACAACAAACATAGGCAAATATAATTTTCCCAAATATACATTTA‑GAAAAAAATC‑TCCCTTAGATTATCTATATAATAAAAAGAATATTCCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTa < 1:539900/182‑1 (MQ=255) aaaaaTTAAAATACTGCTATCCCCCACCACAACAATAATATGCAAAAATAAATTCCACAAATATAAAATTT‑AAAAAAAATCGTCCGTT‑GAGTATCTATATCATAAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTc < 1:373157/251‑1 (MQ=255) aaTTGAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTAttt > 1:674773/1‑156 (MQ=255) gAAATACTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATc > 1:53562/1‑94 (MQ=255) aaaTACTTCTATCCCCCACCACAAAAATCATAGGCAAATATAAATTTCACCAATATACAATTT‑GAAAAAAATCGTCCTTT‑GAGTATCTATATCATAAAAAGAAGTTTTCCTGAAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGaa < 1:812807/251‑1 (MQ=255) cTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGagatag > 1:232114/1‑137 (MQ=255) cTGCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATc > 1:719460/1‑140 (MQ=255) gCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTa > 1:867489/1‑251 (MQ=255) gCTATACCCCACCACAACAATCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTa > 1:846799/1‑251 (MQ=255) caacaaTCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCtata > 1:270431/1‑70 (MQ=255) caacaaTCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTa > 1:798291/1‑251 (MQ=255) caacaaCCATATGCAAATATAAATTTCCCCAATATACAATTT‑AAAAAAAATCGTCCGTT‑GATTATCTATATAATAAAAAGAAGATTCCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTc < 1:357227/222‑1 (MQ=255) aaaTCATATGAGAATATAAATTTCACAAATATACAATTT‑GAAACAAATCGTCCGTG‑GAGTATCTATATCATAAAAAGAAGTTTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGt < 1:792644/250‑1 (MQ=255) aaTCATATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCta > 1:321544/1‑64 (MQ=255) cACCAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATCCAACGc > 1:753846/1‑239 (MQ=255) ccAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATcc > 1:129333/1‑232 (MQ=255) ccAATATACAATTT‑GAAACAAATCGTCCGTT‑GAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATCCAACGCTTTTGTTCACATGa > 1:32871/1‑251 (MQ=255) caaaTATACAATTT‑GAAACAAATCGTCCTTT‑GAGTATCTATATCATAAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTc < 1:788322/186‑1 (MQ=255) tttt‑GAAACAAATCGTCCGTT‑GAGTATCTATATAATTAAAAGAAGTTTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTAttt < 1:639233/91‑1 (MQ=255) aaaaaaaaTCGTCCGTT‑GAGTATATATATCATAAAAAAAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATCCAACGCTTTTGTTCACATGAAAACGCAATAGCAt < 1:501722/246‑1 (MQ=255) | GTTTGCCATTTATCGGAGAAGGCAACCATCGGAGCGCCAATTACAACATTTTTAGCAATAACAGCTTGAGACGTTAATAGGATTCCACCACAAAGTAACGCAAGTAGTGTCTTTTTCATAATGCTACTCCCTTTTATCGGTTAAACGAATAACAACAAAAATTGAAATACTGCTATACCCCACCACAACAATCACATGCGAATATAAATTTCACCAATATACAATTT‑GAAACAAATCGTCCGTT‑TAGTATCTATATCATTAAAAGAAGATTTCCTGCAACCGCCATTTTTTGAAAGTGTGAGATAGATCTTATTTTTTGGAAGGAAAATTTAACTACTGCAAAAATAAACTAAATATTTTATTTTTAGCAAAAAAATAGGAGTCCAAAGACTCCTATGTTCATGCTCAATACGAATTCGTTACGCAACCTCTTCTACGTCTATCCAACGCTTTTGTTCACATGAAAACGCAATAGCAT > 1/1955934‑1956411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |