| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,879,316 | C→A | intergenic (+84389/‑55015) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,879,316 | 0 | C | A | 95.7% | 176.6 / ‑4.0 | 69 | intergenic (+84389/‑55015) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base C (2/1); new base A (36/30); total (38/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGAAATCGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TGCCCGCCCGAATTTACGTTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCCGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAGCGCTGGACGAAAATAAAGCCCATTT > 1/1879070‑1879556 | ggagAAATCGTCACCCGTCTGCATGCAATTAGTAGGCCTTTTTGGGGGT‑AGTTTTTGGTCTTACTTTCCCCGGGGGGGGGGGGTCGTG‑CCCCCG‑CCAAATTTTGGTTTGGGAT‑AGGGGGGGGC‑AAAGGGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGa < 1:210994/247‑1 (MQ=255) ccATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGGCCTG‑TGCCCCCCCGAATTTTCGTTT‑TGATAAATGGCGGGG‑ACC‑GGACCCCCCCCCCCCAAAACAAACCTGTTGTTTTGATGTAAAAAAGGAAGGACGTATCATTACCACCGTAATCTTCTTTTTTTTCAACCAAAGC‑CTTTTCGAAAAACAAGAAAAAAAGGCGGAGGAGGGGCAGCAAGGAAAGTATTatt > 1:189423/1‑249 (MQ=255) gggTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTT‑TTCCCCCCCCAATTTTAGTTT‑TGATAAAGGGGGGGG‑GCA‑GGGCCCCCCCCCCCAAAAACAAATCTGTTGTTTTGATGTAAAAGAGGAAAGACGTATCATTACCACCCCCATCTTCTTTCTTCTCAACGAACCC‑TTTTTTGAAAAAGAAGAAAAAATGCAGGGGGAGGGGCCGCAAGTAATGAATTACTCTTTTGCAATCGGGCACCAt > 1:125069/1‑251 (MQ=255) gg‑CTTACATTCTCCCGTAGGGGCGGGGCCTGTTGCCC‑CCCGAAATTTCGTTT‑TGGTAATGGGGGGGG‑ACA‑GGACCCCCCCCCCCCAAAACAAATCTCTTGCTTTGATGTAAAGCCATGAGGGCGGATCATTACCACCCTCATATTCTTTTTTCTTTACAAAAGCTTTTTTCGAAAA‑GAAGAAAAAGTGCCAGAGCAGGCGCAGCAAGGAATGTATTACTCTTTTGCAATAGGTCCCCACGTGGGtgtggtt > 1:876055/1‑248 (MQ=255) ggtttACTTTCCCCCGTGGGGGCGGGTCCGG‑CCCCCGCCAGATTTTATTTTT‑GAAAAAGGGGCGGGC‑ACA‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgat < 1:131283/247‑1 (MQ=255) ttttacttcccccggggggggCGGGTCCTG‑GCCCCGCCTGATTTTAGGTTT‑GGATAA‑GGGGGGGCAACG‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgattg < 1:799218/234‑1 (MQ=255) ggTCCTG‑TGCCCGCCCGAATTTACGTTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTActc > 1:272364/1‑196 (MQ=255) gTCCTG‑TGCCCGCCCGAATTTACGTTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCAtg > 1:565525/1‑215 (MQ=255) cccattatccaaacgtaaattcgggcgggc‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAgg > 1:633978/23‑251 (MQ=255) ttgtttgaaaagggggggggc‑AAA‑GGCCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATcaac < 1:399031/234‑1 (MQ=255) ttt‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:679448/1‑240 (MQ=255) ggATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATcaac > 1:482715/1‑245 (MQ=255) tgaaaaaggggggggcaagggagccGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAAtt < 1:862138/227‑1 (MQ=255) gATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:361607/1‑236 (MQ=255) gATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGt > 1:143269/1‑251 (MQ=255) gATAAGGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGt < 1:852399/160‑1 (MQ=255) ggcgggc‑ACG‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgat < 1:28545/190‑1 (MQ=255) ggcgggc‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGa > 1:757883/1‑229 (MQ=255) gc‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCa > 1:70885/1‑173 (MQ=255) c‑aca‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCg > 1:361862/1‑251 (MQ=255) ggACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTAc > 1:173172/1‑148 (MQ=255) aCCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGgtg < 1:683627/174‑1 (MQ=255) cTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCaaa > 1:474127/1‑251 (MQ=255) ctctGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATCTAc < 1:158218/251‑1 (MQ=255) ctGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAg < 1:503856/251‑1 (MQ=255) tttGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAggg < 1:396323/250‑1 (MQ=255) ttGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAggg < 1:711538/250‑1 (MQ=255) gCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAg < 1:508988/233‑1 (MQ=255) gCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTa > 1:886865/1‑251 (MQ=255) tAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATg < 1:669668/251‑1 (MQ=255) tAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATg < 1:278933/251‑1 (MQ=255) gATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCaa < 1:174711/102‑1 (MQ=255) gATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGaa > 1:88375/1‑251 (MQ=255) aTGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAg > 1:614357/1‑89 (MQ=255) aTGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAAtt > 1:752152/1‑235 (MQ=255) gTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCtt < 1:461148/115‑1 (MQ=255) gTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAAtt > 1:397482/1‑251 (MQ=255) gCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATcaacaa > 1:686028/1‑187 (MQ=255) gCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCaa > 1:201036/1‑218 (MQ=255) gCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCg > 1:657230/1‑251 (MQ=255) gTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGa > 1:777993/1‑204 (MQ=255) gTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGaaa > 1:25398/1‑251 (MQ=255) gTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGaaa > 1:335917/1‑251 (MQ=255) gACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGtgattgat > 1:532553/1‑134 (MQ=255) gACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGa < 1:771524/234‑1 (MQ=255) tATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGtgattg > 1:893594/1‑251 (MQ=255) tATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGtgattg > 1:878666/1‑251 (MQ=255) tATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGtgatt < 1:790827/250‑1 (MQ=255) aTCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTAc < 1:640164/93‑1 (MQ=255) aTCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGa < 1:747891/229‑1 (MQ=255) aTCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGtgattga > 1:421132/1‑251 (MQ=255) cATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGtgat > 1:565989/1‑246 (MQ=255) tGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCCGGAACAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGGGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAGGGGGAGGCAAAGCGTAAATTTGCAGGGTTAATGAAATTCGGCGAAATCGtgatcgactcc < 1:67599/251‑8 (MQ=255) ccaccGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGt < 1:27547/251‑1 (MQ=255) ccGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTAc < 1:250003/83‑1 (MQ=255) ccGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGt < 1:663464/213‑1 (MQ=255) ccGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCAt > 1:476386/1‑251 (MQ=255) ccGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCAt > 1:730738/1‑251 (MQ=255) cGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAggg < 1:41433/211‑1 (MQ=255) tAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCAtgtg < 1:333394/251‑1 (MQ=255) cttctatcttctCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTActc < 1:268016/78‑1 (MQ=255) cttctCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGa > 1:324278/1‑205 (MQ=255) tctcAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCtt > 1:254011/1‑108 (MQ=255) cAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAg > 1:896715/1‑251 (MQ=255) aacgaacgC‑TTTGTCGAAAACGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAgc < 1:249557/251‑1 (MQ=255) cGAAGAACAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAGCGCTGGACGAAAATAAAGccc < 1:485379/251‑1 (MQ=255) gaaCAAGTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAGCGCTGGACGAAAATAAAGCCCAttt > 1:776798/1‑251 (MQ=255) gTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTc < 1:365857/120‑1 (MQ=255) gTGCAGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTc > 1:297550/1‑194 (MQ=255) | AGCGAAATCGTCAACCGTCTGCATGCCATTAGTATGCCGTTTTCGGGGTAAGTTATTGG‑CTTACATTCTCCCGTAGGGGCGGGTCCTG‑TGCCCGCCCGAATTTACGTTT‑GGATAATGGGCGGGC‑ACA‑GGACCCGCCCCTACAAAAGCAACTCTGTTGCTTAGATGTAAAGCAGTAAGGACGTATCATGACCACCGTAATCTTCTATCTTCTCAACGAACGC‑TTTGTCGAAAACGAAGAACAAGTGCCGGAGCAGGCGCAGCAAGTAATGTATTACTCTTTGGCAATCGGTCACCATGTGGGTGTGATTGATTGCTTCAAAAAATTGCTGATTTGCGACTACGAGGATTATCAACAATTTGTCGCCGCCTTCCCGGAAGGGGAAGCAAAGCGTAAATTTACAGGGTTAATGAAATTCGGCGAAATCGTGATTGATTCCAGTCATGTGAATTTATTGGCGAAAGCGCTGGACGAAAATAAAGCCCATTT > 1/1879070‑1879556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |