Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,839,682 C→T intergenic (+44755/‑94649) unknown → / → unknown tRNA‑Leu‑CAA/tRNA‑Asp‑GTC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,839,6820CT100.0% 48.3 / NA 19intergenic (+44755/‑94649)unknown/unknowntRNA‑Leu‑CAA/tRNA‑Asp‑GTC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (9/10);  total (9/10)

ATTCAATTATTTCTTCAAAATGAGTATCCATTAAAGATTTATCATATCCTAACAATGCCCCATTTAAATATATGTTTTCTCTTGCCGTTAATTCTCCATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAACCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGTACAATATAAATTCATCTTGTT  >  1/1839453‑1839889
                                                                                                                                                                                                                                     |                                                                                                                                                                                                               
aTTCAATTATTTCTTCAAAATGAGTATCCATTAAAGATTTATCATATCCTAACAATGCCCCATTTAAATATATGTTTTCTCTTGCCGTTAATTCTCCATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTa                                                                                                                                                                                            >  1:344322/1‑251 (MQ=255)
                                                       tGCCCCATTTAAATATATGTTTTCTCTTGCCGTTAATTCTCCATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCtt                                                                                                                                     <  1:523715/251‑1 (MQ=255)
                                                                                    ccGTTAATTCTCCATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATaa                                                                                                                      >  1:499174/1‑237 (MQ=255)
                                                                                               ccATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTa                                                                                                                                                                                            <  1:742369/156‑1 (MQ=255)
                                                                                                   cAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTcc                                                                                         <  1:489915/251‑1 (MQ=255)
                                                                                                               cTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAGAATTCTTGGAACATTAACTCTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTttatta                                                                             <  1:486153/251‑1 (MQ=255)
                                                                                                                  gCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTGCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAAcatc                                                                                                                                                                           >  1:422476/1‑154 (MQ=255)
                                                                                                                   ctctATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCAcc                                                                                                                                                                                                   >  1:210217/1‑129 (MQ=255)
                                                                                                                   ctctATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAg                                                                                                                                                                                  <  1:606268/146‑1 (MQ=255)
                                                                                                                                                            cTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATa                                <  1:678567/251‑1 (MQ=255)
                                                                                                                                                             tttATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAAc                                                      >  1:320209/1‑228 (MQ=255)
                                                                                                                                                                            aaTTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGTACAatat                <  1:8877/251‑1 (MQ=255)
                                                                                                                                                                                     gATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTaa                                                                            <  1:200644/182‑1 (MQ=255)
                                                                                                                                                                                         aGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAAc                                                                                                                                            >  1:683162/1‑114 (MQ=255)
                                                                                                                                                                                          gTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGTACAATATAAATTCAtcttgtt  >  1:291642/1‑251 (MQ=255)
                                                                                                                                                                                                  agtGTAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGTACAATATAAATTCAtct      >  1:591968/1‑239 (MQ=255)
                                                                                                                                                                                                   gtgtAGATTTTCCTGAGCCATTAGTACCAATCAATCCCCAAGATGCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGc                              <  1:431690/214‑1 (MQ=255)
                                                                                                                                                                                                                       ttAGTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGt                       <  1:764410/201‑1 (MQ=255)
                                                                                                                                                                                                                          gTACCAATCAATCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAg                                                                          >  1:709366/1‑147 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                               
ATTCAATTATTTCTTCAAAATGAGTATCCATTAAAGATTTATCATATCCTAACAATGCCCCATTTAAATATATGTTTTCTCTTGCCGTTAATTCTCCATCAAATCCAGCTCCTAGCTCTATAAGAGGAGAAATCTTTCCATGAACTTCAAGTTTTCCTTTATATGGTTTTAGAATTCCACAGATAAGTTTTAGTAGTGTAGATTTTCCTGAGCCATTAGTACCAATCAACCCCCAAGATTCACCCTTTTTAACTTTAAAAGAAACATCATTTAATGATAAAAATTCTTGGAACATTAACTTTCCTTTTAGCATTTTTATAATGTAGTCTTTTAAGCCGCTATAATTTTCCATTGCTTTATTAAAGCGAACAGTAGCATTTTCAACGTTAATTATTTCTGTATTCATAGCTATATGTACAATATAAATTCATCTTGTT  >  1/1839453‑1839889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑