| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,820,386 | T→C | intergenic (+25459/‑113945) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,820,386 | 0 | T | C | 98.5% | 174.3 / NA | 68 | intergenic (+25459/‑113945) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (33/34); total (33/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTTATCGACCTGTTAAAACTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCTATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATACCTGAATAACCCGTTC > 1/1820140‑1820626 | aCTTATCGACCTGTTAAAACTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATg > 1:191706/1‑250 (MQ=255) aCCTGTTAAAACTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCaa < 1:571909/250‑1 (MQ=255) cTGTTAAAACTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGc < 1:91279/251‑1 (MQ=255) aaaaCTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTc < 1:865451/251‑1 (MQ=255) aaaaCTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTc < 1:662702/251‑1 (MQ=255) aTCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCAcc < 1:837177/251‑1 (MQ=255) cgaTTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGAttt > 1:553815/1‑251 (MQ=255) cgaTTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGAttt > 1:779698/1‑251 (MQ=255) tACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACcac < 1:467503/251‑1 (MQ=255) tctTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATc < 1:879962/251‑1 (MQ=255) aGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCa > 1:211085/1‑251 (MQ=255) ggATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGGGGCGCAAGCCCTTTCTGCCGCCTTTCAGGTGGCGCCGCCAGTTCGCTTTTTACATTCTTGCCTTGCGTATTTTTTAGCCCCGGGCGCCAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAAAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAAcc < 1:271104/250‑1 (MQ=255) gTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCTTTCGGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGc < 1:9154/250‑1 (MQ=255) gTTTTCGGCGGAAAATTCGTGGCGCAACCCCTTTCTGCCCCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGTTGTGAAAATTCTACGCGAAGGCAAAAATTCCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGc < 1:768762/250‑1 (MQ=255) cggcggACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGTTTTTTACATTCTTGCCATGCGTA‑TTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAg < 1:467037/251‑1 (MQ=255) gACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAAc > 1:735460/1‑220 (MQ=255) aaGCCCTTTCTCCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAAAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAg < 1:300021/251‑1 (MQ=255) aGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAgg > 1:7819/1‑251 (MQ=255) cccTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGc > 1:531386/1‑250 (MQ=255) aTTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCaa > 1:33538/1‑213 (MQ=255) tCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTGAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAAAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGt < 1:3143/251‑1 (MQ=255) gTGGCGCCGACAGTTCGCTTTTTACATTCTTGCCATGCGTTTTTTTTACCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGAAAATTCTACGCGAAGGCAGAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTc < 1:7291/248‑1 (MQ=255) ggCGCGGACAGAGCCCTTTTTACTTTCTTCCCAGGCGTATTTTTTAGCCCCGGGAGA‑AGGCAAAATTCGAATCAGTAATGAGGTGAAAGTGCTCCGCGAAGGGAAAAATTCCC‑CGGCTATGCGGTTCAAGACCATTCAGAACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGaa < 1:545007/250‑1 (MQ=255) ggCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGaaa > 1:867510/1‑251 (MQ=255) tCGCTTTTTACATTCTTGCCAGGCGTATTTTTTAGCCCCGGGCGACACCCAATATCCG‑ATAATTTATGATGTGGAAATTCTGCGCGAAGGCAAAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATcc < 1:751162/251‑1 (MQ=255) cTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTc > 1:432374/1‑122 (MQ=255) cTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGAAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAg > 1:427685/1‑250 (MQ=255) tttACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAg > 1:15865/1‑203 (MQ=255) ttACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAAt > 1:473138/1‑251 (MQ=255) ttCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACcac > 1:4868/1‑136 (MQ=255) ttCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGc < 1:141681/144‑1 (MQ=255) ttCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCct > 1:766815/1‑146 (MQ=255) ttCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGgcg > 1:113600/1‑250 (MQ=255) gCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTc > 1:872600/1‑141 (MQ=255) gCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAg > 1:477646/1‑165 (MQ=255) ttttAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCgg > 1:462636/1‑207 (MQ=255) ttttAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCg > 1:747642/1‑251 (MQ=255) ttttACCCCCGGGCGCCAGCCAATACCCG‑ACCATTTATGATGTGAAAATTCTACGCGAAGGCAAAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATg < 1:353775/239‑1 (MQ=255) acgccggggggACAGCAAATATCCG‑TTTATTTATGATGTGGAAATTCTACGCGAAGGCAGAATTTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGTTTTGCCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTg < 1:126602/240‑1 (MQ=255) gCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTc < 1:530413/68‑1 (MQ=255) gCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTAcg > 1:826511/1‑251 (MQ=255) gCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTAcg > 1:665183/1‑251 (MQ=255) cAATACCCG‑ATAATTTATGATGTGAAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATgg < 1:538276/211‑1 (MQ=255) atatCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAAc < 1:220340/117‑1 (MQ=255) atatCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTc > 1:658045/1‑178 (MQ=255) tatCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGa > 1:610651/1‑251 (MQ=255) aTCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGcc > 1:137274/1‑250 (MQ=255) aTCATTTATGATGTGGAAATTCTACGCGAAAGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGcc > 1:161377/1‑250 (MQ=255) tCATTTATGATGTGGAAATTCTCCGCGAAGGCAGAAATTCCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGcccc < 1:528234/251‑1 (MQ=255) cATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATc < 1:536521/91‑1 (MQ=255) cATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAg > 1:276438/1‑127 (MQ=255) cATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGt > 1:878909/1‑136 (MQ=255) cATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGa < 1:680734/177‑1 (MQ=255) cATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGccc > 1:791930/1‑249 (MQ=255) tttATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCttt > 1:41355/1‑251 (MQ=255) tttATGATGTGAAAATTCTACGCGAAGGCAGAATTTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGcccc < 1:852758/248‑1 (MQ=255) tgatgTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGata < 1:14380/251‑1 (MQ=255) tgacgtgaaattccatcgcgACGGCAAAAATCACA‑CCGCCATGCGCTCCAAAGCTATTCAGCACAAATCACCGATTTACCAAATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGata < 1:487081/235‑1 (MQ=255) gtgGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAAcc > 1:62859/1‑99 (MQ=255) gtgGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCa < 1:72768/160‑1 (MQ=255) gtgGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCg > 1:217117/1‑251 (MQ=255) gaaaaTTCTCCGCGAGGGCAAAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTc < 1:436719/160‑1 (MQ=255) tCTACGGGAA‑GCAAAAATTTCCCCCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAAt < 1:18861/251‑1 (MQ=255) ccgcgAAGGCAAAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATAcc < 1:384568/250‑1 (MQ=255) ccccgAAGGCAAAAATTTCC‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATAcc < 1:710956/248‑1 (MQ=255) gCAGAAATTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATACCTGAATaa < 1:468732/250‑1 (MQ=255) aaaTTTCA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATACCTGAATAACCCGt > 1:853044/1‑251 (MQ=255) attccA‑CCGCCATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATACCTGAATAACCCGTTc < 1:176218/247‑1 (MQ=255) | ACTTATCGACCTGTTAAAACTGGAAAAAATCGACGATTTACTCTTTCGCGGCGAAAGTCAGGATTTAGGCTTCCGTCAGGTTTTCGGCGGACAAGTCGTGGCGCAAGCCCTTTCTGCCGCCATTCAGGTGGCGCCGACAGATCGCTTTTTACATTCTTGCCATGCGTATTTTTTAGCCCCGGGCGACAGCCAATATCCG‑ATCATTTATGATGTGGAAATTCTACGCGAAGGCAGAAATTTCA‑CCGCTATGCGCGTCAAAGCCATTCAGCACAAATCACCGATTTACCACATCACCGCCTCTTTCCAAACCTTGGAGCAAGGCTTTGAGCATCAAAGTGAGATGCCAAAAGTGGAGGCCCCCGATGCACTCATGTCGGAAAGCTCGGTGATCCAGCAAATGGCGCAAATGATTCCGGAAGCGGTGCGCGATAAATTTACGGCGGAACGCCCCTTTGATATTCGCACCAAATACCTGAATAACCCGTTC > 1/1820140‑1820626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |