| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,811,052 | T→C | intergenic (+16125/‑123279) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,811,052 | 0 | T | C | 98.8% | 216.5 / ‑5.5 | 81 | intergenic (+16125/‑123279) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (36/44); total (36/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.39e-01 | |||||||||||
TGATATTGCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATTGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCAGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCACGCCGCGAT > 1/1810815‑1811297 | tGATATTGCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATgcg > 1:606265/1‑250 (MQ=255) tGCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtctc < 1:12539/251‑1 (MQ=255) gCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:764858/1‑249 (MQ=255) gCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:711978/1‑249 (MQ=255) gCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:675286/1‑249 (MQ=255) gCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:662165/1‑249 (MQ=255) gCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:588833/1‑249 (MQ=255) caTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtct > 1:353873/1‑246 (MQ=255) caTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCa > 1:369822/1‑251 (MQ=255) aTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACCCCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc < 1:108854/251‑1 (MQ=255) aTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAGAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc < 1:605515/251‑1 (MQ=255) aTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc < 1:276540/251‑1 (MQ=255) aTAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc < 1:470330/251‑1 (MQ=255) tAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc > 1:333111/1‑250 (MQ=255) tAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc > 1:205518/1‑250 (MQ=255) tGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACaa < 1:300309/251‑1 (MQ=255) tGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACaa < 1:630774/251‑1 (MQ=255) cgcCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAAc < 1:62231/247‑1 (MQ=255) ccATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGc < 1:405537/250‑1 (MQ=255) ccATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGc < 1:32766/250‑1 (MQ=255) aTGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCACCCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAAc < 1:343114/251‑1 (MQ=255) aTGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGc < 1:228230/248‑1 (MQ=255) gcTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAAc < 1:574276/250‑1 (MQ=255) cGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGcc < 1:165634/251‑2 (MQ=255) ggAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGccgt > 1:20090/1‑248 (MQ=255) ggAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGccg < 1:157729/250‑3 (MQ=255) cgcCGAACGCCATCCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGCCCGCGCCCGAAAACCAAAGCATCCTCTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGACAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAAtgtg < 1:657647/251‑1 (MQ=255) aCGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACAttt > 1:392412/1‑251 (MQ=255) cGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACAtttt > 1:323361/1‑251 (MQ=255) aaCCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCAt < 1:541306/251‑1 (MQ=255) aCCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATc < 1:185780/251‑1 (MQ=255) cccTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCt > 1:245529/1‑208 (MQ=255) cAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTg < 1:891647/251‑1 (MQ=255) tGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGAtt > 1:838353/1‑251 (MQ=255) gCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGAtt > 1:74404/1‑250 (MQ=255) gATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCAc > 1:519570/1‑161 (MQ=255) aTTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTattg < 1:574729/251‑1 (MQ=255) aTTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTattg < 1:588422/251‑1 (MQ=255) ttCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAAc < 1:247163/175‑1 (MQ=255) ttCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAAtg > 1:589995/1‑213 (MQ=255) cacCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCCCTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATTGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGAttgttg < 1:660871/251‑1 (MQ=255) cacCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGAttgttg < 1:81416/251‑1 (MQ=255) ggTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACcgc > 1:790043/1‑152 (MQ=255) taaagcggccggggCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTATTTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAgg < 1:162797/239‑1 (MQ=255) tAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAgg < 1:803812/250‑1 (MQ=255) caaaaCTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAgg < 1:349138/249‑1 (MQ=255) aaaCTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAAt < 1:843492/251‑1 (MQ=255) tGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGc < 1:77770/187‑1 (MQ=255) gCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTa > 1:532969/1‑250 (MQ=255) cgcCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGc > 1:678677/1‑143 (MQ=255) cccGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCAc > 1:828818/1‑242 (MQ=255) ccGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGa < 1:195410/205‑1 (MQ=255) ccAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACtt < 1:836709/236‑1 (MQ=255) aaaGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTa < 1:197925/251‑1 (MQ=255) gCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGc < 1:414679/161‑1 (MQ=255) aCTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTAc > 1:713200/1‑220 (MQ=255) aCTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGCGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGAAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAAt > 1:14235/1‑215 (MQ=255) cTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAAt > 1:384854/1‑251 (MQ=255) gTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAAtg < 1:78758/153‑1 (MQ=255) gTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACAt < 1:630218/159‑1 (MQ=255) gTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTAc < 1:891925/210‑1 (MQ=255) gTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGC‑TTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAg > 1:589565/1‑143 (MQ=255) tCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAggg < 1:93823/251‑1 (MQ=255) tCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAggg < 1:50020/251‑1 (MQ=255) aTCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGgcg < 1:731515/251‑1 (MQ=255) accaTGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTtctctc > 1:734991/1‑64 (MQ=255) gggCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCATATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCaa > 1:303682/1‑251 (MQ=255) gggCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGAttc > 1:603746/1‑143 (MQ=255) ggCAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGAc < 1:146636/119‑1 (MQ=255) cAAAATATGTTTGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAAc < 1:792645/250‑1 (MQ=255) tttGGTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCa < 1:145746/251‑1 (MQ=255) gTATGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAaata > 1:10218/1‑251 (MQ=255) tGTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATc < 1:121458/251‑1 (MQ=255) gTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACtt > 1:743099/1‑158 (MQ=255) gTTCACGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATcc < 1:180295/169‑1 (MQ=255) cGTTGTGCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCCTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCAcg > 1:538509/1‑251 (MQ=255) cGTTGTGCGAATCGTTCCAAATGCACTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCAcg > 1:756061/1‑251 (MQ=255) gtgCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTAc > 1:251972/1‑144 (MQ=255) gtgCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCAcgccg > 1:16807/1‑250 (MQ=255) gtgCGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCAcgccg > 1:583111/1‑250 (MQ=255) cGAATCGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCCGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCACGCCGCGAt < 1:692620/251‑1 (MQ=255) | TGATATTGCACATAAGCGGCTTGCGCCATGGCGGCTAAATTTGACACGGGAATCACCGGCAAATTGGCGCCGAACGCCAACCCTTGCGCAATGCCGGCACCGATTCGAACACCGGTAAAACTGCCCGGGCCGCGCCCGAAAACCAAAGCATCCACTTGATAGAGTTTAATTCCCGCCTGCGCCAGAATTTCATCCACCATGGGCAAAATATGTTTGGTATGTTCACGTTGTGCGAATTGTTCCAAATGCGCTTTCTCTCCACCGCGTAACAATGCAACAGAACAAGCTTCTGTAGCAGTATCTAAAGCAAGTAATGTGACATTTTTCATCGTTATTCTGATTCTTCTTTATTGATTGTTGTGAGGAATTGTACCACTTTGTGCAAATCCCGCGTACGTTTAAAATTCGGCAAACTGCGCAAAAAGGTTTCACCGTAAGGGCGCATCACCAAACGATTATCGCAAATAATCACCACGCCGCGAT > 1/1810815‑1811297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |