| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,801,153 | C→T | intergenic (+6226/‑133178) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,801,153 | 0 | C | T | 98.9% | 229.8 / NA | 88 | intergenic (+6226/‑133178) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (44/43); minor base A (1/0); total (45/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCATTCACTGCTAAATCACGCCCCTGGATTCTCCACGTAGTATCACCGAAAGCGCCTCTACCAATGCCGTTTTTGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATGGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGCGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATACCGGCAATGGAACCGATTAAGTTG > 1/1800916‑1801395 | atCATTCACTGCTAAATCACGCCCCTGGATTCTCCACGTAGTATCATCGAAAGCGCCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGaa > 1:879997/1‑251 (MQ=255) cTGCTAAATCACGCCCCTGGATTCTCCACGTAGTATCATCGAAAGCGCCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAAttt > 1:17632/1‑250 (MQ=255) ttAAATCACGCCCCTGGATTCTCCACGTAGTACAATCGAAAGCGCCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGACCCCGTTGATTGAGGAAAGATTTGGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACAAAGAAAAGTGGCAATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCAt < 1:493556/249‑1 (MQ=255) tcCACGTAGTATCATCGAAAGCGCCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATggcg > 1:276361/1‑251 (MQ=255) catcGAAAGCGCCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCcca > 1:17564/4‑250 (MQ=255) aaaGCGCCTCTACCAATGCGGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACAAAGAATAATGGCGATAACCGCATAAATAACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATag < 1:173140/251‑1 (MQ=255) cgcCTCTACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAAGGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGTGAATAAAtt < 1:235606/204‑1 (MQ=255) tACCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTTTTGATAGCGCCACCAAAAAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAAt < 1:179321/197‑1 (MQ=255) cccAATGCCGTTTTCGGCAATAGTAAAGACTTTTCCCTGCACCCCTATCATAGCATAATCCCGTTGATTAAGGACAGATTTCGATTGATCAATTTGATCCTAACCGTGTTGATAGCGCCCCCAAAAAATACTAAGAATAAGGGCGATAACCGAAGAATTTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAacac < 1:597405/250‑1 (MQ=255) aCCAATGCCGTTTTCGGCAATAGTTAAGCCTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATACCCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAAt < 1:855593/192‑1 (MQ=255) aCCAATGCCGTTTTCGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAacac < 1:526834/251‑1 (MQ=255) cAATAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCAGGAATGACAACTTc < 1:215017/250‑1 (MQ=255) aTAGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAg > 1:187093/1‑250 (MQ=255) aGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCaa > 1:225832/1‑251 (MQ=255) aGTTAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCa < 1:498080/250‑1 (MQ=255) ttAAGACTTTTCCCTGCCCCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCaa < 1:263504/249‑1 (MQ=255) ttAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCCCCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCaa < 1:672340/249‑1 (MQ=255) ttAAGACTTTTCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCaa < 1:57603/249‑1 (MQ=255) tttCCCTGCCCCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGAGAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGAt < 1:443785/251‑1 (MQ=255) tCCCTGCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAACGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAAAACCGGGAATGACAACTTCAGCaa > 1:374284/1‑239 (MQ=255) gCACCCCTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCa > 1:471667/1‑251 (MQ=255) ccccTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGa > 1:73398/1‑251 (MQ=255) ccccTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGa > 1:792824/1‑251 (MQ=255) ccTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCCCCAAATAATACTAAGAATAATGGCGATACCCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAAt < 1:733253/251‑1 (MQ=255) ccTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAAt < 1:740439/251‑1 (MQ=255) cTATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAAAAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATc < 1:802096/186‑1 (MQ=255) tATCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAac > 1:313049/1‑204 (MQ=255) aTCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATGCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAg > 1:643971/1‑251 (MQ=255) aTCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACt > 1:497247/1‑219 (MQ=255) aTCATAGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAg > 1:858656/1‑251 (MQ=255) aTCATAGCATGACCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAAAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGAt < 1:378852/236‑1 (MQ=255) catagCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc < 1:42277/247‑1 (MQ=255) catagCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc < 1:862712/247‑1 (MQ=255) catagCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc < 1:17888/247‑1 (MQ=255) catagCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc < 1:513310/247‑1 (MQ=255) tagCATGATCCCGTTGATTGAGGACAGATTTCAATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAAAAATGGCAATACCCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCaa < 1:35377/220‑1 (MQ=255) aTCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATATTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCCAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCaaa > 1:803431/1‑251 (MQ=255) attgaGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGc < 1:620855/120‑1 (MQ=255) attgaGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAAc > 1:13522/1‑221 (MQ=255) tgaGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCt < 1:175993/251‑1 (MQ=255) gATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAAc > 1:606068/1‑188 (MQ=255) gATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCa > 1:92273/1‑213 (MQ=255) aTTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAAcc < 1:5150/249‑1 (MQ=255) aTTTCGATTGATCAATTTGATCCTTACCGTGTTATTAGCGCCACCAAATAATACAAAGAATAAGGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAAcc < 1:663512/249‑1 (MQ=255) tGATCAATTTGATCCTTACCGTGTTAATAGCGCCACCAAATAATACTAAGAATAAGGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATAcc < 1:186444/251‑1 (MQ=255) aTCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATAccc < 1:845323/250‑1 (MQ=255) cAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAAc < 1:265607/251‑1 (MQ=255) aTTTGATCCTTCCCGTGTTGATAGCGCCACCAAAAAATACTAAGAAAAAGGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCt < 1:650209/251‑1 (MQ=255) aTTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATACCCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAac < 1:320112/158‑1 (MQ=255) gATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGa > 1:513020/1‑250 (MQ=255) tCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc < 1:93452/202‑1 (MQ=255) tCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACtt > 1:563856/1‑251 (MQ=255) tCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACtt > 1:170300/1‑251 (MQ=255) cTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGcccc < 1:151919/215‑1 (MQ=255) tACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGAt > 1:712741/1‑181 (MQ=255) ccGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCttgt > 1:176509/1‑251 (MQ=255) gtgtTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATgg > 1:410271/1‑116 (MQ=255) gtgtTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAAt < 1:499279/212‑1 (MQ=255) tgtTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCttgttg < 1:852182/250‑1 (MQ=255) ccaccaAATAATACTAAGAATAATGGCGATACCCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATAcc < 1:770629/219‑1 (MQ=255) ccaccaAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATcc > 1:645606/1‑114 (MQ=255) ccaccaAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACttt > 1:811757/1‑251 (MQ=255) aaaTAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACtt > 1:384972/1‑144 (MQ=255) aaaTAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGAt < 1:93168/160‑1 (MQ=255) aaaTAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGcc > 1:401723/1‑177 (MQ=255) aaaTAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACt > 1:518371/1‑244 (MQ=255) aaaTAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTAt > 1:554674/1‑251 (MQ=255) aCTAAGAATAATGGCAAAAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAAcc < 1:133692/197‑1 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATcc > 1:17637/1‑97 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAAc < 1:18346/206‑1 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCttgttg > 1:786173/1‑222 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:611801/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:900573/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:801820/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:243515/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:181493/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:637157/1‑251 (MQ=255) gAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGAGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaat > 1:623162/1‑250 (MQ=255) gAATAACGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaata > 1:787247/1‑251 (MQ=255) ggacagggcaaTAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaat < 1:709913/239‑1 (MQ=255) aatGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTc < 1:505454/251‑1 (MQ=255) ggCGATAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTc > 1:285923/1‑189 (MQ=255) tAACCGCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATAc < 1:434895/251‑1 (MQ=255) aacccactaaaaTTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATGCCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATAc < 1:664451/242‑1 (MQ=255) gCATAAATTACCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaat > 1:552544/1‑233 (MQ=255) aCCGCCAATGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTtaat > 1:695690/1‑224 (MQ=255) tGCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATACCGGCAATGGAACCGATTAAGtt > 1:821479/1‑251 (MQ=255) gCCGAAAGTGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATACCGGCAATGGAACCGATTAAGTTg > 1:130556/1‑251 (MQ=255) | ATCATTCACTGCTAAATCACGCCCCTGGATTCTCCACGTAGTATCACCGAAAGCGCCTCTACCAATGCCGTTTTTGGCAATAGTTAAGACTTTTCCCTGCACCCCTATCATGGCATGATCCCGTTGATTGAGGACAGATTTCGATTGATCAATTTGATCCTTACCGTGTTGATAGCGCCACCAAATAATACTAAGAATAATGGCGATAACCGCATAAATTACCGCCAATGCCGAAAGCGGTAAGGCGGGAATAAATTTCATGATACCGGCAACAACGATGGCGGCTAATCCCCACCATAGAAGAAAAACACCGGGAATGACAACTTCAGCAATGAGCAAGATAAAACCAAGAATAAGCCAGTGCCAAACGCCCCAATCTGCTAACCATTCCATACCCAACCTCGACTTTCTTGTTGTTAATTTACTTTTTTATCGGTTTTTAATAATTCGGTAATACCGGCAATGGAACCGATTAAGTTG > 1/1800916‑1801395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |