Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,790,479	T→C	intergenic (+70521/‑4363)	unknown → / → unknown	tRNA‑Asn‑GTT/tRNA‑Leu‑CAA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,790,479	0	T	C	100.0%	157.0 / NA	58	intergenic (+70521/‑4363)	unknown/unknown	tRNA‑Asn‑GTT/tRNA‑Leu‑CAA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/26);  total (32/26)

GTGTCTGCCAGCGCTTTCAATTTGGCATCAGTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGTGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATCCAGAATGA  >  1/1790235‑1790718                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                gtgtCTGCCAGCGCTTTCAATTTGGCATCAGTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTg                                                                                                                                                                                                                                           >  1:723030/1‑251 (MQ=255)              cTTTCAATTTGGCATCAGTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCt                                                                                                                                                                                                                                             >  1:695443/1‑236 (MQ=255)                             cAGTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGc                                                                                                                                                                                                                                     <  1:83040/229‑1 (MQ=255)                               gTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTtg                                                                                                                                                                                                             >  1:650882/1‑251 (MQ=255)                                    gTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTtgctg                                                                                                                                                                                                          >  1:661881/1‑249 (MQ=255)                                     tCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTtgctg                                                                                                                                                                                                          >  1:547702/1‑248 (MQ=255)                                        tGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGttt                                                                                                                                                                                                    <  1:93346/251‑1 (MQ=255)                                        tGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGttt                                                                                                                                                                                                    <  1:599180/251‑1 (MQ=255)                                          ggATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTgg                                                                                                                                                                                                  >  1:514543/1‑251 (MQ=255)                                               gttgGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGttt                                                                                                                                                                                                    >  1:239304/1‑244 (MQ=255)                                                       aaaTTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGtt                                                                                                                                                                                                                                         >  1:332747/1‑199 (MQ=255)                                                       aaaTTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAgcc                                                                                                                                                                                     <  1:795125/251‑1 (MQ=255)                                                                       tttCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTc                                                                                                                                                                     <  1:673731/251‑1 (MQ=255)                                                                       tttCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTc                                                                                                                                                                     <  1:326596/251‑1 (MQ=255)                                                                                gAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCg                                                                                                                                                            >  1:611617/1‑251 (MQ=255)                                                                                   gTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTg                                                                                                                                                         >  1:185545/1‑251 (MQ=255)                                                                                   gTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTg                                                                                                                                                         >  1:388167/1‑251 (MQ=255)                                                                                             tttttCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGa                                                                                                                                               <  1:744257/251‑1 (MQ=255)                                                                                                  cttctAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAg                                                                                                                                          >  1:546089/1‑251 (MQ=255)                                                                                                    tctAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCa                                                                                                                                        >  1:181910/1‑251 (MQ=255)                                                                                                       aaaTCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCAtt                                                                                                                                      >  1:804668/1‑250 (MQ=255)                                                                                                          tCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGt                                                                                                                                  >  1:692875/1‑251 (MQ=255)                                                                                                                 gCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAaat                                                                                                                                                                                                                       <  1:577785/159‑1 (MQ=255)                                                                                                                      tGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATc                                                                                                                      <  1:649721/251‑1 (MQ=255)                                                                                                                                gTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCgaag                                                                                                                                                                                          <  1:687888/173‑1 (MQ=255)                                                                                                                                gTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCa                                                                                                                                        <  1:52190/223‑1 (MQ=255)                                                                                                                                gTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGa                                                                                                            >  1:28765/1‑251 (MQ=255)                                                                                                                                 ttCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGa                                                                                                            <  1:764151/250‑1 (MQ=255)                                                                                                                                      aTTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCg                                                                                                      <  1:859961/251‑1 (MQ=255)                                                                                                                                               gttCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACg                                                                                             >  1:4624/1‑251 (MQ=255)                                                                                                                                                ttCTTTATAGGAAAGTTTGACGGTTTACGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACg                                                                                             <  1:259535/250‑1 (MQ=255)                                                                                                                                                    ttATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGAt                                                                                                        >  1:138750/1‑235 (MQ=255)                                                                                                                                                    ttATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGAt                                                                                                        >  1:125060/1‑235 (MQ=255)                                                                                                                                                    ttATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAg                                                                                        >  1:361383/1‑251 (MQ=255)                                                                                                                                                      ataGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCa                                                                                      <  1:25522/251‑1 (MQ=255)                                                                                                                                                       taGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCaa                                                                                     <  1:111445/251‑1 (MQ=255)                                                                                                                                                              gTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGctgctg                                                                                                                                                                                                       >  1:123996/1‑130 (MQ=255)                                                                                                                                                              gTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTc                                                                                                                                                                     <  1:406171/164‑1 (MQ=255)                                                                                                                                                              gTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTc                                                                                                                                                                     >  1:221806/1‑164 (MQ=255)                                                                                                                                                              gTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGAt                                                                                                        >  1:867869/1‑225 (MQ=255)                                                                                                                                                                   aCGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATa                                                                         <  1:17412/251‑1 (MQ=255)                                                                                                                                                                       ttttCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATc                                                                      <  1:875536/250‑1 (MQ=255)                                                                                                                                                                                         cGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCcaa                                                    >  1:62658/1‑250 (MQ=255)                                                                                                                                                                                         cGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCcaa                                                    >  1:456649/1‑250 (MQ=255)                                                                                                                                                                                         cGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCcaa                                                    >  1:661776/1‑250 (MQ=255)                                                                                                                                                                                           tttttATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCaaa                                                                                                                                                 <  1:550376/155‑1 (MQ=255)                                                                                                                                                                                           tttttATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGAGGTATTATCAATCAATTCACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCcaacaa                                                 >  1:390027/1‑251 (MQ=255)                                                                                                                                                                                                     ccACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGc                                                                                                                                                                                                                                     >  1:115575/1‑61 (MQ=255)                                                                                                                                                                                                          gCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTa                                   >  1:507387/1‑250 (MQ=255)                                                                                                                                                                                                               ttcttcTTTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAAt                                                                                                                   >  1:689825/1‑165 (MQ=255)                                                                                                                                                                                                                   tcttTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTc                         <  1:459184/251‑1 (MQ=255)                                                                                                                                                                                                                   tcttTTTTCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTc                         <  1:49837/251‑1 (MQ=255)                                                                                                                                                                                                                         ttCGGCTCGATTTTTTTATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGt                   <  1:881191/251‑1 (MQ=255)                                                                                                                                                                                                                                   tttttttATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATcc         <  1:242825/251‑1 (MQ=255)                                                                                                                                                                                                                                   tttttttATTTTTAACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATcc         <  1:12771/251‑1 (MQ=255)                                                                                                                                                                                                                                       tttatttttaACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATCCAGaa     <  1:67378/251‑1 (MQ=255)                                                                                                                                                                                                                                          atttttaACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATCCAGAATGa  >  1:277254/1‑251 (MQ=255)                                                                                                                                                                                                                                          atttttaACCGCGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATCCAGAATGa  >  1:473201/1‑251 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                GTGTCTGCCAGCGCTTTCAATTTGGCATCAGTGATGTCGTGGGATTGTTGGAAAAAATTCGGGTCGGCGATTTCGCTTTGAAGTGCGGTGATTTTTTCTTCTAAATCTTCCAGCAATTGCGGCAGCTGTTCCAATTCGCGTTGTTCTTTATAGGAAAGTTTGACGGTTTTCGGTTTGTTGGAAACGTTTTTATTTTCCACCGCACTTTCTTCTTTTTTCGGCTCGATTTTTTTATTTTTAACCGTGCCTTGTTCGGCTTTTTGTGCAAAATAATTGGCTTGCTGCTGTTTGGCGTCGAAGAAGCCGCCGACGTATTTATTCAGCACGCCGTTGCCTTCAAAGATGTAGCATTCGGTGGCGGTATTATCAATAAATTGACGATCGTGACTGACGATAAGCAAGGTGCCTTGATAATCCGTGAGAATTTCTTCCAACAATTCCAAGGTTTCTACGTCCAAGTCATTAGTCGGCTCATCCAGAATGA  >  1/1790235‑1790718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑