| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,728,566 | T→C | intergenic (+8608/‑66276) | unknown → / → unknown | tRNA‑Asn‑GTT/tRNA‑Leu‑CAA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,728,566 | 0 | T | C | 98.8% | 230.4 / NA | 81 | intergenic (+8608/‑66276) | unknown/unknown | tRNA‑Asn‑GTT/tRNA‑Leu‑CAA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (37/43); minor base G (0/1); total (37/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTACCGGCGCGCCTACCGCACATTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACGGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCTATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTCGCCACCACCGAT > 1/1728320‑1728812 | tttACCGGCGCGCCTACCGCACATTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTa < 1:587245/251‑1 (MQ=255) cGGCGCGCCTACCGCACATTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATg < 1:283228/251‑1 (MQ=255) gCACATTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGga > 1:583852/1‑251 (MQ=255) acaTTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGgaag < 1:712878/251‑1 (MQ=255) aTTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGgaagaa > 1:869778/1‑251 (MQ=255) caccGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTg < 1:703951/251‑1 (MQ=255) ccGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGAc < 1:7041/239‑1 (MQ=255) cGGCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTa < 1:524746/251‑1 (MQ=255) gCATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGCGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATTAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACCTGGAAGAAAGAAGACGGTGAAATTGTTAt > 1:171463/1‑250 (MQ=255) cATTGCGGTGGGGATGGCGACAGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATc < 1:487048/250‑1 (MQ=255) cagATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGAc > 1:776239/3‑215 (MQ=255) gATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCtt > 1:900642/1‑250 (MQ=255) atatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTTGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTc > 1:647863/1‑250 (MQ=255) atatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCa > 1:869979/1‑251 (MQ=255) atatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCa > 1:114900/1‑251 (MQ=255) atatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCa > 1:496931/1‑251 (MQ=255) tatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCAc < 1:596008/251‑1 (MQ=255) tatTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCAc < 1:471373/251‑1 (MQ=255) acaTTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCAt > 1:334901/1‑250 (MQ=255) tAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATAAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCgcgc < 1:475252/251‑1 (MQ=255) tGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGc < 1:667868/250‑1 (MQ=255) tGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGc < 1:646361/250‑1 (MQ=255) gTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCaaaa > 1:893623/1‑251 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTaaaa < 1:606131/139‑1 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATc > 1:665748/1‑180 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATg < 1:131942/240‑1 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCaaaaa > 1:847962/1‑251 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCaaaaa > 1:207285/1‑251 (MQ=255) ttATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCaaaaa > 1:792291/1‑251 (MQ=255) tCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTc < 1:41785/192‑1 (MQ=255) tCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGAtgg > 1:870863/1‑251 (MQ=255) tCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGAtgg > 1:503239/1‑251 (MQ=255) tCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGAtgg > 1:167802/1‑251 (MQ=255) aaaaCTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGa < 1:685324/251‑1 (MQ=255) cTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGat > 1:49353/1‑251 (MQ=255) tGGACGATTTATTAACCTTAGTGCAGGGCCCTGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCg < 1:711583/250‑1 (MQ=255) ggACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCa < 1:771381/155‑1 (MQ=255) ggACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGtg > 1:626934/1‑251 (MQ=255) aaTTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGaa > 1:634782/1‑251 (MQ=255) attattAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAg > 1:378819/1‑251 (MQ=255) taACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGAt < 1:364449/251‑1 (MQ=255) taACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGAt < 1:122251/251‑1 (MQ=255) ccGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGgaag < 1:785107/116‑1 (MQ=255) tAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGaa < 1:139387/251‑1 (MQ=255) tAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGaa < 1:319107/251‑1 (MQ=255) tAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGaa < 1:27888/251‑1 (MQ=255) tAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACGGGGTCGCGGTTCGATTAAAATGCGCGCCCCTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGGGCCTTGCCGCATCAGTCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGaa < 1:792213/251‑1 (MQ=255) gTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTa < 1:153574/133‑1 (MQ=255) gTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAgcgc > 1:186643/1‑140 (MQ=255) gTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCg > 1:578045/1‑230 (MQ=255) ggCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGc < 1:604993/233‑1 (MQ=255) cccGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGc < 1:268681/251‑1 (MQ=255) cccGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGc < 1:102317/251‑1 (MQ=255) cGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATAtt > 1:813684/1‑206 (MQ=255) gAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGc < 1:622464/250‑1 (MQ=255) attTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTGTCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCg < 1:553315/251‑1 (MQ=255) ttCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCggg < 1:785222/251‑1 (MQ=255) gCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTgg > 1:94306/1‑251 (MQ=255) aaaGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGatat < 1:611015/251‑1 (MQ=255) aaaGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGatat < 1:343271/251‑1 (MQ=255) aaaGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGatat < 1:445925/251‑1 (MQ=255) gaagaTATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGa > 1:398870/1‑251 (MQ=255) aagaTATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGgaag > 1:175087/1‑62 (MQ=255) aagaTATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGAc < 1:280486/251‑1 (MQ=255) aagaTATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGAc < 1:557427/251‑1 (MQ=255) aagaTATTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGAc < 1:37578/251‑1 (MQ=255) atatTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACg < 1:143281/249‑1 (MQ=255) atTCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGt > 1:105312/1‑251 (MQ=255) tCGGAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATcc < 1:402590/198‑1 (MQ=255) gAAGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATgg > 1:121499/1‑251 (MQ=255) aGATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGca > 1:354605/1‑251 (MQ=255) gATTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGca > 1:684902/1‑250 (MQ=255) aTTTATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGc < 1:117162/205‑1 (MQ=255) tttATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACAt > 1:530618/1‑251 (MQ=255) tttATCAACTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACAt > 1:314976/1‑251 (MQ=255) aaCTGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTc < 1:566942/251‑1 (MQ=255) tGGGTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTCGcc < 1:339707/251‑1 (MQ=255) gggTCGCGGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATc > 1:643135/1‑61 (MQ=255) cgGTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTCGCCACCACCg < 1:701040/251‑1 (MQ=255) gTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTg > 1:137030/1‑191 (MQ=255) gTTCCATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTCGCCACCACCGAt > 1:243651/1‑251 (MQ=255) | TTTACCGGCGCGCCTACCGCACATTTTACTCAACGGCACCACCGGCATTGCGGTGGGGATGGCGACGGATATTCCACCGCACAACATTAATGAAATCGCCGACGCGGCGGTGATGTTATTGGACAATCCGAAAACTACGCTGGACGAATTATTAACCGTAGTGCAAGGCCCCGATTTCCCGACGGAAGCAGAAATTATTTCGCCGAAAGAAGATATTCGGAAGATTTATCAACTGGGTCGCGGTTCTATTAAAATGCGCGCCACTTGGAAGAAAGAAGACGGTGAAATTGTTATCAGCGCCTTGCCGCATCAATCTTCACCGTCGAAAGTCATCGCGCAAATCGCCGAGCAGATGAATGCCAAAAAACTGCCGATGGTGGAAGATATTCGTGATGAAGCGGATCATGAAAATCCGGTGCGCATCGTGCTGGTGCCGCGTTCCAATCGGGTGGATATTGACGCCGTGATGGCACATTTATTCGCCACCACCGAT > 1/1728320‑1728812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |