Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,706,925 T→C intergenic (‑36977/‑12958) unknown ← / → unknown tRNA‑Arg‑CCG/tRNA‑Asn‑GTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,706,9250TC100.0% 161.0 / NA 58intergenic (‑36977/‑12958)unknown/unknowntRNA‑Arg‑CCG/tRNA‑Asn‑GTT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/27);  total (31/27)

CGTGGAAAGCATGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTTGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCTGTGAATAGCCCGAATGGCTGATCCCAATCGCCACAT  >  1/1706680‑1707170
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     
cGTGGAAAGCATGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCtt                                                                                                                                                                                                                                                  <  1:326918/251‑1 (MQ=255)
     aaaGCATGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTAc                                                                                                                                                                                                                                              <  1:525879/250‑1 (MQ=255)
        gCATGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTAc                                                                                                                                                                                                                                              >  1:573082/1‑247 (MQ=255)
          aTGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATaa                                                                                                                                                                                                                                        <  1:761169/251‑1 (MQ=255)
                ttttCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGt                                                                                                                                                                                                                                   <  1:187530/250‑1 (MQ=255)
                                     acaTACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaataa                                                                                                                                                                                                             >  1:474946/1‑251 (MQ=255)
                                      caTACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaataat                                                                                                                                                                                                            >  1:676048/1‑251 (MQ=255)
                                      caTACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaataat                                                                                                                                                                                                            >  1:684601/1‑251 (MQ=255)
                                      caTACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaataat                                                                                                                                                                                                            <  1:56453/251‑1 (MQ=255)
                                      caTACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaataat                                                                                                                                                                                                            <  1:71245/251‑1 (MQ=255)
                                                     cTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTa                                                                                                                                                                                             >  1:630244/1‑251 (MQ=255)
                                                               gTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAAt                                                                                                                                                                                   >  1:626907/1‑251 (MQ=255)
                                                                   aTGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAAtctc                                                                                                                                                                                >  1:827548/1‑250 (MQ=255)
                                                                         tAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAg                                                                                                                                                                         <  1:110112/251‑1 (MQ=255)
                                                                          aaCGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGt                                                                                                                                                                        <  1:775773/251‑1 (MQ=255)
                                                                                          cAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGc                                                                                                                                                        <  1:48718/251‑1 (MQ=255)
                                                                                              ccTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGtt                                                                                                                                                    >  1:555028/1‑251 (MQ=255)
                                                                                                  tttCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGAcc                                                                                                                                                <  1:899529/251‑1 (MQ=255)
                                                                                                              agCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATc                                                                                                                                     <  1:290317/250‑1 (MQ=255)
                                                                                                               gCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCcg                                                                                                                                   >  1:206505/1‑251 (MQ=255)
                                                                                                                  gTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCgt                                                                                                                                >  1:535286/1‑251 (MQ=255)
                                                                                                                           gAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTaa                                                                                                                       >  1:135897/1‑251 (MQ=255)
                                                                                                                             aTGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATa                                                                                                                     >  1:618328/1‑251 (MQ=255)
                                                                                                                                aTACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATcc                                                                                                                                                                                                                        >  1:545694/1‑149 (MQ=255)
                                                                                                                                aTACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTg                                                                                                                                                                                                          >  1:3010/1‑163 (MQ=255)
                                                                                                                                aTACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCcgcg                                                                                                                                 >  1:451291/1‑236 (MQ=255)
                                                                                                                                aTACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAgg                                                                                                                   <  1:768365/250‑1 (MQ=255)
                                                                                                                                 tACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATc                                                                                                                                                                                                                              <  1:170230/142‑1 (MQ=255)
                                                                                                                                    taataaTGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGAc                                                                                                                                                 >  1:58551/1‑216 (MQ=255)
                                                                                                                                     aataatGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATc                                                                                                                                     >  1:25386/1‑227 (MQ=255)
                                                                                                                                      ataatGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACg                                                                                                             >  1:619447/1‑250 (MQ=255)
                                                                                                                                          tGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAAc                                                                                                        <  1:81287/251‑1 (MQ=255)
                                                                                                                                                  aaaTTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGtt                                                                                                <  1:764097/251‑1 (MQ=255)
                                                                                                                                                       ccTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGc                                                                                                                                                                                                                                                    >  1:363677/1‑98 (MQ=255)
                                                                                                                                                                      aTAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGccc                                                                             >  1:161756/1‑250 (MQ=255)
                                                                                                                                                                         gTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAaata                                                                                                                                                                                                              <  1:725380/118‑1 (MQ=255)
                                                                                                                                                                         gTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGCGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGtt                                                                         >  1:804414/1‑251 (MQ=255)
                                                                                                                                                                              ctcCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTtttgtt                                                                    >  1:123854/1‑251 (MQ=255)
                                                                                                                                                                                ccTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGAcc                                                                                                                                                <  1:334979/173‑1 (MQ=255)
                                                                                                                                                                                   aTTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAg                                                                                                                                                                         >  1:500901/1‑145 (MQ=255)
                                                                                                                                                                                   aTTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTAc                                                                                                                                           >  1:9068/1‑175 (MQ=255)
                                                                                                                                                                                   aTTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTtttgttt                                                                   >  1:839444/1‑247 (MQ=255)
                                                                                                                                                                                   aTTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCg                                                               >  1:531834/1‑251 (MQ=255)
                                                                                                                                                                                     ttAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTAcc                                                                                                                                                                                                                                             >  1:186722/1‑75 (MQ=255)
                                                                                                                                                                                     ttAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGAt                                                             >  1:580712/1‑251 (MQ=255)
                                                                                                                                                                                          aCGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATcc                                                                                                                                                                                                                        <  1:529071/91‑1 (MQ=255)
                                                                                                                                                                                               gttCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGc                                                                                                                  <  1:261342/188‑1 (MQ=255)
                                                                                                                                                                                                ttCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACgtg                                                   <  1:732114/250‑1 (MQ=255)
                                                                                                                                                                                                     aaaTAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAGTAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTGACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCg                                             <  1:664123/251‑1 (MQ=255)
                                                                                                                                                                                                     aaaTAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGc                                                                                                                                                        >  1:229929/1‑144 (MQ=255)
                                                                                                                                                                                                     aaaTAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCg                                             <  1:71446/251‑1 (MQ=255)
                                                                                                                                                                                                          aCATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACtg                                                                                                      >  1:685677/1‑189 (MQ=255)
                                                                                                                                                                                                           cATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCt                                                                                                                                                                                                                                                   <  1:688362/47‑1 (MQ=255)
                                                                                                                                                                                                                      ttCTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGttccaccggtgaaaac                            <  1:526536/251‑15 (MQ=255)
                                                                                                                                                                                                                        cTGTTTGGTTTTGGTCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCtg                                     >  1:756564/1‑240 (MQ=255)
                                                                                                                                                                                                                                      tCGCGGCGTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCTGTGAATAGCCCGAATGGCTGATccc             <  1:795522/250‑1 (MQ=255)
                                                                                                                                                                                                                                             gTCCTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCTGTGAATAGCCCGAATgg                     <  1:175521/235‑1 (MQ=255)
                                                                                                                                                                                                                                                cTGTTCGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCTGTGAATAGCCCGAATGGCTGATCCCAATCGCCACAt  <  1:391871/251‑1 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                     
CGTGGAAAGCATGAAGTTTTCACCGGTGGAACCGCCCACATACAAGCCGTCCACTTTCATTTTGTCGATGTTGTAACGAATAATTTCGCGCAAACCTTTTTCATTCACAGAGCCGTCTTCGTTGAATGATACTAATAATGCACTGAAAATTCCTTTTAAATCCCGCATAGTTTTCTCCTATTTAATACGTTGTTCTAAAATAACATTAAGTGTTTTCTGTTTGGTTTTGGTCGCGGCGTCCTGTTTGGCTTGTACCAATAAAGCGTAGATCAAATCCAATACAAATAATTGAGCGATTTTCGTACCGATGGAATCTCCCTGGAGTTTCCCTTGTTTATTGCCGTTGACCAGTACAAAATCCGCGTGTTCGGTAATAGGCGAACGCAAACTGTGCGTTAACGCCACTGTCGTCGCCCCGTTTTGTTTGGCGATTTTTAACGTGTGGGCGGTTTCCTGTGAATAGCCCGAATGGCTGATCCCAATCGCCACAT  >  1/1706680‑1707170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑