| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,545,511 | A→G | intergenic (‑100883/‑96253) | unknown ← / → unknown | tRNA‑Met‑CAT/tRNA‑Gly‑GCC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,545,511 | 0 | A | G | 98.7% | 217.9 / ‑5.5 | 79 | intergenic (‑100883/‑96253) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Gly‑GCC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (44/34); minor base C (0/1); total (44/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACGTTATGTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCAATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCATTTGCCACGCCGATGATGAATTGGCGCCTTGGTG > 1/1545266‑1545756 | gACGTTATGTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATa > 1:596370/1‑249 (MQ=255) aCGTTATGTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAc < 1:611495/249‑1 (MQ=255) aCGTTATGTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAc < 1:326397/249‑1 (MQ=255) gTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGtt > 1:585818/1‑251 (MQ=255) aTCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCAcc < 1:47880/236‑1 (MQ=255) aTCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCaaa > 1:758056/1‑251 (MQ=255) aTCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCaaa > 1:59643/1‑251 (MQ=255) tCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCg < 1:250611/237‑1 (MQ=255) cccTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAc < 1:745313/228‑1 (MQ=255) gCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCaa > 1:665904/1‑251 (MQ=255) aTTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAg > 1:246904/1‑251 (MQ=255) agatgtgtataagaaaaagACAGCAAAGAACTTGTGAAAGGCACGGTAAAAAGCACTGATAAAGCTAACGGTTTTTTAAAATGTGACAAAAAAAGCTATTTAATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCGCCCGTTTTATCGCCAAAGTGCGGTTCAATAAAg < 1:626714/232‑1 (MQ=255) caacaaATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGaa > 1:421143/1‑251 (MQ=255) cAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGt < 1:196595/249‑1 (MQ=255) cAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGt < 1:290789/249‑1 (MQ=255) cAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGt < 1:121105/249‑1 (MQ=255) gAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCa > 1:74471/1‑251 (MQ=255) cGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAc > 1:241249/1‑184 (MQ=255) gtgGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTa > 1:710695/1‑234 (MQ=255) gAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAatat > 1:661500/1‑251 (MQ=255) aaGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAatat < 1:722155/250‑1 (MQ=255) gCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATCACAGGTATTGGTCGATCACCCGAATat‑caa < 1:198406/250‑1 (MQ=255) ggTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAt‑caatcaa > 1:8074/1‑250 (MQ=255) gTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATaa < 1:345866/203‑1 (MQ=255) aaaaaGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCa > 1:174007/1‑251 (MQ=255) gCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTgg > 1:618209/1‑250 (MQ=255) cACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGgc < 1:765152/250‑1 (MQ=255) cTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGgcgc > 1:451340/1‑250 (MQ=255) cTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGgcgc > 1:870331/1‑250 (MQ=255) cTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGcgcc < 1:5022/251‑1 (MQ=255) gATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAGGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATat‑c < 1:248697/231‑1 (MQ=255) gATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATc > 1:4328/1‑220 (MQ=255) gATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAatat < 1:662762/230‑1 (MQ=255) aGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATat‑c > 1:345333/1‑226 (MQ=255) gTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAAccc > 1:272735/1‑227 (MQ=255) gTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAc < 1:889114/245‑1 (MQ=255) gTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATc < 1:224943/250‑1 (MQ=255) gTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGATTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATc > 1:445740/1‑250 (MQ=255) aTGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGt < 1:859094/192‑1 (MQ=255) gACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGtt > 1:234842/1‑251 (MQ=255) gCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAgg > 1:380809/1‑250 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTc < 1:194161/146‑1 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATaa > 1:450941/1‑151 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATaa > 1:701904/1‑151 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGAt < 1:469222/251‑1 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGAt > 1:755509/1‑251 (MQ=255) aTTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGAt > 1:519967/1‑251 (MQ=255) ttATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAg < 1:481213/164‑1 (MQ=255) ttATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTgg > 1:682017/1‑251 (MQ=255) tGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGggtgg < 1:317544/251‑1 (MQ=255) cgccgGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCa < 1:268478/251‑1 (MQ=255) ccgGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGtggtgg < 1:111635/247‑1 (MQ=255) cgGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCa < 1:522708/251‑1 (MQ=255) gAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGggtgg > 1:734038/1‑236 (MQ=255) aaaaaaGTGAAGGACCGCGACAAAAACCGCGCCACCAATGAAAAACCGGGCGAACAAAG‑ACCAGCCGAAACCGAAGGCCTGAACGAACCCATTCTTCACCCGTTTTATCGCAAAAGGCCGTTTCATTAAGGAC‑AGGAATTACAAGTATTTGGCGATCCCCCGAATATCCAATCACCCCATT‑GCGGCGCGGAAAACAAAACCCGT‑AAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAAc < 1:320012/251‑1 (MQ=255) aCAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCTGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGtgatga < 1:307895/250‑1 (MQ=255) aCAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTgatgat < 1:437564/251‑1 (MQ=255) cAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATc < 1:155786/251‑1 (MQ=255) gcgcCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGtt > 1:856259/1‑246 (MQ=255) cgcCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTc < 1:213732/250‑1 (MQ=255) cgcCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTc < 1:782347/250‑1 (MQ=255) ccACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGaaa > 1:568746/1‑107 (MQ=255) cTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTggg > 1:802367/1‑198 (MQ=255) cTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATgcg > 1:378677/1‑251 (MQ=255) aTTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTc > 1:495649/1‑217 (MQ=255) aTTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCa > 1:674575/1‑251 (MQ=255) aTTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCa > 1:605501/1‑251 (MQ=255) aTTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCa > 1:799120/1‑251 (MQ=255) tGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCaaa < 1:181697/251‑1 (MQ=255) gAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGggtgg > 1:853928/1‑196 (MQ=255) aaCAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTAcc < 1:361433/251‑1 (MQ=255) aCAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAGGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCAtt > 1:431564/1‑251 (MQ=255) gAACAAGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATc > 1:291734/1‑199 (MQ=255) aGCGGAACCGGAAGCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCATTTGCCACGCCg > 1:627158/1‑251 (MQ=255) gCCCTGATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAgg < 1:291394/145‑1 (MQ=255) gATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGa > 1:505741/1‑141 (MQ=255) gATCGAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCATTTGCCACGCCGATGATGAATTGGCGCCtt > 1:156835/1‑251 (MQ=255) gAACCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCATTTGCCACGCCGATGATGAATTGGCGCCTtggtg > 1:484627/1‑251 (MQ=255) aaCCGATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGgcgc > 1:891156/1‑100 (MQ=255) | GACGTTATGTTTCAAGATAATCCCCTACTCGCCCAATTAAAACAACAAATTCACGACAGCAAAGAACGTGTGGAAGGCACGGTAAAAAGCACTGATAAAGCTTACGGTTTTTTAGAATGTGACAAAAAAAGCTATTTTATTGCACCGCCGGCAATGAAAAAAGTGATGCACGGCGACAAAATCAGCGCCACTATTGAAAAACAGGGCG‑ACAAAGAACAAGCGGAACCGGAAGCCCTGATCGAACCAATAC‑TCACCCGTTTTATCGCCAAAGTGCGGTTCAATAAAGACAAGAAATTACAGGTATTGGTCGATCACCCGAATAT‑CAATCAACCCATTGGCGCCGCGCAAAAC‑AAATCCGTAAAAAAAGAGTTACAGGAAGGCGATTGGGTGGTGGCATCACTTAAAACTCATCCGCTGCGTGATGATCGTTTTTTCTATGCGCAAATTACCCAATTCATTTGCCACGCCGATGATGAATTGGCGCCTTGGTG > 1/1545266‑1545756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |