Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,406,163 C→T intergenic (+246583/+14774) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,406,1630CT100.0% 173.5 / NA 64intergenic (+246583/+14774)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (37/27);  total (37/27)

CTTCTGTGGGCTACATGATGGTTTTAATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGCGCTTGACTTCATACTTGAGAACAATTATCATTTAGATCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATACCGTTCTCGCAGAACTAAAGCGCGGTGTAGATG  >  1/1405916‑1406404
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 
cttctGTGGGCTACATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTg                                                                                                                                                                                                                                                >  1:640332/1‑251 (MQ=255)
            aCATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTCAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTAt                                                                                                                                                                                                                                     >  1:453041/1‑250 (MQ=255)
            aCATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTAt                                                                                                                                                                                                                                     >  1:116262/1‑250 (MQ=255)
            aCATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTAt                                                                                                                                                                                                                                     >  1:619460/1‑250 (MQ=255)
            aCATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTAt                                                                                                                                                                                                                                     >  1:519303/1‑250 (MQ=255)
            aCATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTAt                                                                                                                                                                                                                                     >  1:482238/1‑250 (MQ=255)
             cATGATGGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCa                                                                                                                                                                                                                                   <  1:200161/251‑1 (MQ=255)
                 atgGTTTTGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCAttt                                                                                                                                                                                                                                <  1:605822/250‑1 (MQ=255)
                     ttttGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            <  1:865825/250‑2 (MQ=255)
                     ttttGATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            <  1:744554/250‑2 (MQ=255)
                                       cGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAg                                                                                                                                                                                                         <  1:722331/251‑1 (MQ=255)
                                        gCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGa                                                                                                                                                                                                        >  1:807274/1‑251 (MQ=255)
                                                caTTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCAttt                                                                                                                                                                                                                                <  1:872040/219‑1 (MQ=255)
                                                caTTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCa                                                                                                                                                                                                  >  1:125564/1‑249 (MQ=255)
                                                    gATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            >  1:254528/1‑218 (MQ=255)
                                                     aTGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCaa                                                                                                                                                                                            >  1:666858/1‑250 (MQ=255)
                                                        ccAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACAt                                                                                                                                                                                         <  1:316178/250‑1 (MQ=255)
                                                        ccAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACAt                                                                                                                                                                                         <  1:417453/250‑1 (MQ=255)
                                                        ccAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACAt                                                                                                                                                                                         <  1:680064/250‑1 (MQ=255)
                                                        ccAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACAt                                                                                                                                                                                         <  1:520209/250‑1 (MQ=255)
                                                          aGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            >  1:411152/1‑212 (MQ=255)
                                                           gATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAg                                                                                                                                                                                     >  1:259192/1‑251 (MQ=255)
                                                               tGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGcc                                                                                                                                                                                 <  1:673662/251‑1 (MQ=255)
                                                                      ttACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            <  1:402960/201‑2 (MQ=255)
                                                                        aCTTCATCAGGCGCTGAAATAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAAc                                                                                                                                                                                                                                           <  1:622817/184‑1 (MQ=255)
                                                                        aCTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTcccc                                                                                                                                                                         >  1:548910/1‑250 (MQ=255)
                                                                                 ggCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACAC‑AGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            >  1:809221/1‑188 (MQ=255)
                                                                                     cTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAg                                                                                                                                                                                                         >  1:182580/1‑205 (MQ=255)
                                                                                               gtgtGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATc                                                                                                                                                                                                   <  1:745302/201‑1 (MQ=255)
                                                                                                 gtgGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAAc                                                                                                                                                                                                                                           >  1:465651/1‑159 (MQ=255)
                                                                                                      aGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCAtt                                                                                                                                                                                                                                 <  1:168262/164‑1 (MQ=255)
                                                                                                      aGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAAtt                                                                                                                                          >  1:710562/1‑251 (MQ=255)
                                                                                                       gCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACaa                                                                                                                                                                                                                                         >  1:408702/1‑155 (MQ=255)
                                                                                                       gCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCGTTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAAttt                                                                                                                                         >  1:429910/1‑251 (MQ=255)
                                                                                                            tGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGATTCGCCATTTATTTGATAATTATTTTCATTAAGGGGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTgccg                                                                                                                                     >  1:48657/1‑250 (MQ=255)
                                                                                                            tGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTgccg                                                                                                                                     >  1:375896/1‑250 (MQ=255)
                                                                                                            tGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGATAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATTATTAAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTgccg                                                                                                                                     >  1:549718/1‑250 (MQ=255)
                                                                                                                           gTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACAt                                                                                                                                                                                         >  1:740635/1‑183 (MQ=255)
                                                                                                                           gTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTaaaaaaa                                                                                                                     >  1:896748/1‑251 (MQ=255)
                                                                                                                            tttGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTaaaaaa                                                                                                                      <  1:42697/249‑1 (MQ=255)
                                                                                                                                                  ccACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAAt                                                                                                                                                                                                    >  1:558320/1‑149 (MQ=255)
                                                                                                                                                  ccACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAAtctc                                                                                              <  1:543538/251‑1 (MQ=255)
                                                                                                                                                       gCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTaaaaaa                                                                                                                      >  1:446309/1‑222 (MQ=255)
                                                                                                                                                        cACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTg                                                                                                                                                                                                                                                >  1:28979/1‑99 (MQ=255)
                                                                                                                                                        cACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATaa                                                                                         <  1:113189/250‑1 (MQ=255)
                                                                                                                                                          cTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGt                                                                                      <  1:197214/251‑1 (MQ=255)
                                                                                                                                                            tAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCAtt                                                                                                                                                                                                                                 >  1:685618/1‑110 (MQ=255)
                                                                                                                                                              aTTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGcc                                                                                  <  1:621514/251‑1 (MQ=255)
                                                                                                                                                                      aaaGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGac                                                                                                                                                                                                                            >  1:165195/1‑104 (MQ=255)
                                                                                                                                                                       aaGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTaa                                                                         >  1:879198/1‑251 (MQ=255)
                                                                                                                                                                                 gTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATc                                                                                                                                                                                                                                    >  1:356965/1‑86 (MQ=255)
                                                                                                                                                                                 gTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAAt                                                                                                                                           >  1:660777/1‑175 (MQ=255)
                                                                                                                                                                                 gTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCG‑TTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACAt                                                              >  1:858216/1‑251 (MQ=255)
                                                                                                                                                                                         cGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGa                                                         <  1:718078/249‑1 (MQ=255)
                                                                                                                                                                                         cGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGa                                                         <  1:274875/249‑1 (MQ=255)
                                                                                                                                                                                           ggTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTg                                                                            >  1:12097/1‑228 (MQ=255)
                                                                                                                                                                                                         cGCCATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATg                                       <  1:539890/251‑1 (MQ=255)
                                                                                                                                                                                                           ccATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAGTTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTACCAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGaa                                     >  1:190374/1‑251 (MQ=255)
                                                                                                                                                                                                           ccATTTATTTGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACAt                                                              >  1:184211/1‑226 (MQ=255)
                                                                                                                                                                                                              tttatttGATAATTATTTTCATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATAc                                  <  1:575121/251‑1 (MQ=255)
                                                                                                                                                                                                                                 cATTAAGGTGCTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGc                                                                                   <  1:569859/183‑1 (MQ=255)
                                                                                                                                                                                                                                        gtgcTTGACTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATACCGTTCTCGCAGAACTAAAGCGCGgtg        >  1:292832/3‑251 (MQ=255)
                                                                                                                                                                                                                                               aCTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATACCGTTCTCGCAGAACTAAAGCGCGGTGTAGATg  <  1:766972/250‑1 (MQ=255)
                                                                                                                                                                                                                                               aCTTCATATTTGAGAACAATTATCATTTAGACCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATACCGTTCTCGCAGAACTAAAGCGCGGTGTAGATg  <  1:889980/250‑1 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 
CTTCTGTGGGCTACATGATGGTTTTAATCATTTCCAAATCGCCAAACACATTGATGCCAGATATGACGAATTACTTCATCAGGCGCTGAAAGAAGGTGTGGAAGCCTATGCTTATGCCGCTGAGTTTGAAAAAACACAAGGCATTCCCACCGCACTTAATTTAACTAAAGTGGCACCGTTTAAAGCGGGTTAAGTTTGAATCGCCATTTATTTGATAATTATTTTCATTAAGGCGCTTGACTTCATACTTGAGAACAATTATCATTTAGATCATTCAAACAATAAAATAGATAATCACTCCAACATTTAGCGCCTCCTCCCCCACAAAAGAGGCGTTTTTTTTGCCTGAAATTTGCCGCCCCGGGGTAAAAAAAATTCAAATTTGTCGAATAATCTCTATAATGTAGCCTTTCTGTAATTGAATAACATTAGGAAGTAACATGACTGATATGAATACCGTTCTCGCAGAACTAAAGCGCGGTGTAGATG  >  1/1405916‑1406404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑