Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,347,567 T→C intergenic (+187987/+73370) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,347,5670TC100.0% 98.3 / NA 38intergenic (+187987/+73370)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (17/21);  total (17/21)

TACCCTTCCAGCGTATTGCTTGATACGGATTTGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGTGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCAAATTCAATTTCTACATCAAAATAAAATAAACCATTTTGGTATATCATCATATAGTTAGATAACTCATTATCATATTATCTTCAACAGTTAATAT  >  1/1347327‑1347803
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
tACCCTTCCAGCGTATTGCTTGATACGGATTTGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTtttattt                                                                                                                                                                                                                                    <  1:389630/251‑1 (MQ=255)
                      aTACGGATTTGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGAtt                                                                                                                                                                                                              >  1:881610/1‑251 (MQ=255)
                           gATTTGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATg                                                                                                                                                                                                          >  1:740286/1‑250 (MQ=255)
                               tGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAAtttt                                                                                                                                                                                                                          >  1:20905/1‑230 (MQ=255)
                                                 tACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   <  1:200125/251‑1 (MQ=255)
                                                 tACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   <  1:358727/251‑1 (MQ=255)
                                                      ggACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAcctcc                                                                                                                                                                               <  1:198437/250‑1 (MQ=255)
                                                           tttAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGtt                                                                                                                                                                                                                                          >  1:410219/1‑186 (MQ=255)
                                                                     gcgcAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTtttattt                                                                                                                                                                                                                                    >  1:748764/1‑182 (MQ=255)
                                                                            ttAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGt                                                                                                                                                        <  1:574950/251‑1 (MQ=255)
                                                                                   gCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTta                                                                                                                                                      <  1:803869/246‑1 (MQ=255)
                                                                                    cTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTa                                                                                                                                                 <  1:796884/250‑1 (MQ=255)
                                                                                            aaaTTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAg                                                                                                                                                         <  1:867714/234‑1 (MQ=255)
                                                                                              attaattCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGt                                                                                                                                                        <  1:788438/233‑1 (MQ=255)
                                                                                                     ccTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTtttatt                                                                                                                                                                                                                                     <  1:101986/149‑1 (MQ=255)
                                                                                                     ccTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTAc                                                                                                                                                                                        <  1:599695/194‑1 (MQ=255)
                                                                                                                         gTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTa                                                                                                            >  1:780113/1‑250 (MQ=255)
                                                                                                                                 ccATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGt                                                                                                                                                        <  1:804784/198‑1 (MQ=255)
                                                                                                                                      gtgCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAAc                                                                                                                            <  1:409031/221‑1 (MQ=255)
                                                                                                                                          tttttGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCAAAt                                                                                             >  1:102065/1‑248 (MQ=255)
                                                                                                                                                                                        gtgtTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTGCATAATTTGCGTCTTTAGATTCATGCAAATATTGAGATGGTACtat                                                                                                                                                                                     <  1:394334/114‑1 (MQ=255)
                                                                                                                                                                                             aaTATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   >  1:464222/1‑111 (MQ=255)
                                                                                                                                                                                                 tatCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGAtt                                                                                                                                                                                                              >  1:776630/1‑80 (MQ=255)
                                                                                                                                                                                                 tatCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACtat                                                                                                                                                                                     >  1:494339/1‑105 (MQ=255)
                                                                                                                                                                                                           ggCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   >  1:348748/1‑97 (MQ=255)
                                                                                                                                                                                                           ggCAACATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACt                                                                                                                                                  <  1:880318/130‑1 (MQ=255)
                                                                                                                                                                                                                cATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   >  1:505038/1‑92 (MQ=255)
                                                                                                                                                                                                                cATGATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCAAATTCAATTTCTACATCAAAATAAAATAAACCATTTTGGTATATCATCATATAGTTAGATAACTCATTATCat                       >  1:649125/1‑248 (MQ=255)
                                                                                                                                                                                                                   gATAAGTAATCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAAt                                                                                                                                                                  <  1:545965/106‑1 (MQ=255)
                                                                                                                                                                                                                           aTCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAcc                                                                                                                                                                                  >  1:622077/1‑82 (MQ=255)
                                                                                                                                                                                                                           aTCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   <  1:877435/81‑1 (MQ=255)
                                                                                                                                                                                                                           aTCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCAt                                                                                                                                                                          <  1:154849/90‑1 (MQ=255)
                                                                                                                                                                                                                           aTCCACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGAACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCaa                                                                                               >  1:113629/1‑165 (MQ=255)
                                                                                                                                                                                                                             ccACAATATTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCAt                                                                                                                                                                          >  1:522494/1‑88 (MQ=255)
                                                                                                                                                                                                                                  atatTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAat                                                                                                                                                                                                     <  1:222376/56‑1 (MQ=255)
                                                                                                                                                                                                                                  atatTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATAc                                                                                                                                                                                   <  1:367241/74‑1 (MQ=255)
                                                                                                                                                                                                                                  atatTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGt                                                                                                                                                        <  1:772214/101‑1 (MQ=255)
                                                                                                                                                                                                                                  atatTGTAAAGTCGCGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCAAATTCAATTTCTACATCAAAATAAAATAAACCATTTTGGTATATCATCATATAGTTAGATAACTCATTATCATATTATCTTCAACAGTTAatat  >  1:365690/1‑251 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
TACCCTTCCAGCGTATTGCTTGATACGGATTTGAATATCCAAAAAACCGTACCGGGACATTTAGGCACGGCGCAAATTAAACAGCTGGCAGGAAATTAATTCCTTAATACGAAAAAGTGCGGTCAAAATCCATTGTGCTTTTTGACCGCACTTTGATCTGCACCCCAAAATAACATTTTTTAGAGTGTTAATATATCTAAGCAGGCAACATGATAAGTAATCCACAATATTGTAAAGTCGTGGTTTTATTTACATAATTTTCGTCTTTAGATTCATGCAAATATTGAGATGGTACTATACCTCCTTCATTTTGAAATAAGGTATAGTTATACTAATTTTTTATTTGATAAAGAACTTTTATTTGTTATCTACGCACTATATCAAATTCAATTTCTACATCAAAATAAAATAAACCATTTTGGTATATCATCATATAGTTAGATAACTCATTATCATATTATCTTCAACAGTTAATAT  >  1/1347327‑1347803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑