Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,308,175 G→A intergenic (+148595/+112762) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,308,1750GA100.0% 75.4 / NA 29intergenic (+148595/+112762)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (14/15);  total (14/15)

AAGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTCTTAACGTATTGATTTAAACAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTGGTTTTAAACTTAGTTTAAACTAAGTTTAACGCTAAGGGGTAAGACTAAAGATTTACACCCAAGTTTAACCTAATCTTTAAATTATTCAAATGCAAAAGCGAGGAACTATGAAAAAAAAGGATTGGAGTAGAAAGCGGATTGTTTACGAGTTACATGAGCGAAACATTACATTGCATTCGCTTTCAGTTAAGTCTGGATTGGCTCCCTCCACATTAAAAAATGCATTGCGAGTTAGTTATCCGAAGG  >  1/1307929‑1308421
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      
aaGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtt                                                                                                                                                                                                                                                    <  1:486843‑M1/251‑4 (MQ=255)
       cTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaacta                                                                                                                                                                                                                                             >  1:117822‑M1/1‑241 (MQ=255)
                        tttGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaagggg                                                                                                                                                                                                                            <  1:101781‑M1/251‑28 (MQ=255)
                              ttttttAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:299749‑M1/251‑34 (MQ=255)
                                                                           cAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaa                                                                                                                                                                         <  1:364573‑M1/251‑79 (MQ=255)
                                                                                                   ctctCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatga                                                                                                                                                    >  1:258807‑M1/1‑149 (MQ=255)
                                                                                                                            gTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggat                                                                                                                        >  1:142910‑M1/1‑124 (MQ=255)
                                                                                                                                              aaaCTAAGTTTAATTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:900553‑M1/139‑34 (MQ=255)
                                                                                                                                                          aTTTACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattac                                                                                          <  1:741275‑M1/251‑158 (MQ=255)
                                                                                                                                                           tttACAATACCTATTAACGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:174772‑M1/126‑34 (MQ=255)
                                                                                                                                                                            cGTATTGATTTAAATAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatg                                                                                                       >  1:17737‑M1/1‑76 (MQ=255)
                                                                                                                                                                                                   atTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacct                                                                                                                                                                                            <  1:335256‑M1/112‑60 (MQ=255)
                                                                                                                                                                                                      tCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacat                                              >  1:748594‑M1/1‑50 (MQ=255)
                                                                                                                                                                                                      tCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacat                                              >  1:654766‑M1/1‑50 (MQ=255)
                                                                                                                                                                                                                                 atttaAACTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      >  1:546691‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                     aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaa               >  1:87221‑M1/1‑19 (MQ=255)
                                                                                                                                                                                                                                     aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaa               >  1:696710‑M1/1‑19 (MQ=255)
                                                                                                                                                                                                                                     aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctc                                                       <  1:441461‑M1/211‑193 (MQ=255)
                                                                                                                                                                                                                                     aaaCTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcag                                                                         <  1:815028‑M1/193‑175 (MQ=255)
                                                                                                                                                                                                                                        cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaaggg            >  1:107266‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                        cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacc                                                                                                                                                                                             >  1:406427‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                        cTATTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacc                                                                                                                                                                                             >  1:265028‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                          aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaaggg            <  1:601089‑M1/249‑236 (MQ=255)
                                                                                                                                                                                                                                          aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattac                                                                                          <  1:590361‑M1/171‑158 (MQ=255)
                                                                                                                                                                                                                                          aTTGTTGACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatg                                                                                                       >  1:794361‑M1/1‑14 (MQ=255)
                                                                                                                                                                                                                                                gACTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacat                                                                                        >  1:366964‑M1/1‑8 (MQ=255)
                                                                                                                                                                                                                                                 aCTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgag                                                                                                              <  1:859599‑M1/144‑138 (MQ=255)
                                                                                                                                                                                                                                                  cTTTAGgtttaaactaagtttaacgctaaggggtaagactaaagatttacacccaagtttaacctaatctttaaattattcaaatgcaaaagcgaggaactatgaaaaaaaaggattggagtagaaagcggattgtttacgagttacatgagcgaaacattacattgcattcgctttcagttaagtctggattggctccctccacattaaaaaatgcattgcgagttagttatccgaagggagaatggatc  <  1:812091‑M1/251‑246 (MQ=255)
                                                                                                                                                                                                                                                  cTTTAGgtttaaactaagtttaacgctaaggggtaagac                                                                                                                                                                                                                      <  1:258146‑M1/39‑34 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                      
AAGTCGTCTTTCCCAGTTTTCTAATTTGGCTTTTTTAGTTACCCCTTGAACAGTTTCTGGTAGTCCAGCTACTCCCAAAAGGTCTTTCAGTTCTAGCCACTCTCGGATCATATCTAACCTCCTAGTTTTAAACCAAGGATTAAAACTAAGTTTAATTTACAATACCTCTTAACGTATTGATTTAAACAAAAATAAATTTCTTTACATAAGTTTTACAAAATTTTTATTTAAACTATTGTTGACTTTGGTTTTAAACTTAGTTTAAACTAAGTTTAACGCTAAGGGGTAAGACTAAAGATTTACACCCAAGTTTAACCTAATCTTTAAATTATTCAAATGCAAAAGCGAGGAACTATGAAAAAAAAGGATTGGAGTAGAAAGCGGATTGTTTACGAGTTACATGAGCGAAACATTACATTGCATTCGCTTTCAGTTAAGTCTGGATTGGCTCCCTCCACATTAAAAAATGCATTGCGAGTTAGTTATCCGAAGG  >  1/1307929‑1308421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑