Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,294,880 T→C intergenic (+135300/+126057) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,294,8800TC100.0% 179.4 / NA 65intergenic (+135300/+126057)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (39/26);  total (39/26)

ATCAATGCCACGTTGACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGCGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTATCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAACCACCACCGCTTTCGGTGCATAGC  >  1/1294638‑1295122
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  
atcaATGCCACGTTGACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAAt                                                                                                                                                                                                                                            >  1:603417/1‑251 (MQ=255)
    aTGCCACGTTGACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTa                                                                                                                                                                                                                                         >  1:243425/1‑250 (MQ=255)
              gACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGcaacaa                                                                                                                                                                                                                               >  1:298114/1‑250 (MQ=255)
              gACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGcaacaa                                                                                                                                                                                                                               >  1:401907/1‑250 (MQ=255)
                   aaGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGAc                                                                                                                                                                                                                         <  1:64895/251‑1 (MQ=255)
                      gTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACggg                                                                                                                                                                                                                                     >  1:696148/1‑236 (MQ=255)
                      gTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTg                                                                                                                                                                                                                       >  1:869430/1‑250 (MQ=255)
                       ttGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGc                                                                                                                                                                                                                      <  1:325253/250‑1 (MQ=255)
                               tATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATAc                                                                                                                                                                                                              <  1:847185/250‑1 (MQ=255)
                                aTTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCt                                                                                                                                                                                                            <  1:119004/251‑1 (MQ=255)
                                                      gTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCg                                                                                                                                                                                      >  1:99674/1‑251 (MQ=255)
                                                      gTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCg                                                                                                                                                                                      >  1:835070/1‑251 (MQ=255)
                                                      gTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCg                                                                                                                                                                                      >  1:711787/1‑251 (MQ=255)
                                                      gTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCg                                                                                                                                                                                      >  1:148950/1‑251 (MQ=255)
                                                           acacCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTg                                                                                                                                                                                  >  1:806983/1‑250 (MQ=255)
                                                                                 aaTGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAgg                                                                                                                                                           <  1:3399/251‑1 (MQ=255)
                                                                                  aTGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGt                                                                                                                                                          <  1:617477/251‑1 (MQ=255)
                                                                                        gcctCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCcgcg                                                                                                                                                    >  1:392058/1‑251 (MQ=255)
                                                                                         cctCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGt                                                                                                                                                   <  1:846888/251‑1 (MQ=255)
                                                                                                 aaGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGtctc                                                                                                                                           <  1:901130/251‑1 (MQ=255)
                                                                                                   ggCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGtct                                                                                                                                            >  1:558837/1‑248 (MQ=255)
                                                                                                     cTTTCACCATTTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGt                                                                                                                                       <  1:548844/251‑1 (MQ=255)
                                                                                                       ttCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTaa                                                                                                                                     >  1:872496/1‑251 (MQ=255)
                                                                                                         cACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAAt                                                                                                                                    >  1:49402/1‑250 (MQ=255)
                                                                                                          aCCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTc                                                                                                                                  <  1:736312/251‑1 (MQ=255)
                                                                                                               gtgtTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGt                                                                                                                                                          >  1:457519/1‑222 (MQ=255)
                                                                                                               gtgtTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGttt                                                                                                                             >  1:893922/1‑251 (MQ=255)
                                                                                                                 gtTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTc                                                                                                                                  <  1:893675/244‑1 (MQ=255)
                                                                                                                   ttAAATTCATTTAACGGGTTCGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTaa                                                                                                                         <  1:223951/251‑1 (MQ=255)
                                                                                                                                       cGCCATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCacac                                                                                                     <  1:518179/251‑1 (MQ=255)
                                                                                                                                         ccATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATAc                                                                                                                                                                                             <  1:610729/161‑1 (MQ=255)
                                                                                                                                         ccATATTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACact                                                                                                    >  1:683639/1‑250 (MQ=255)
                                                                                                                                           atatTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACactcaa                                                                                                 >  1:37852/1‑251 (MQ=255)
                                                                                                                                           atatTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACactcaa                                                                                                 >  1:715199/1‑251 (MQ=255)
                                                                                                                                            tatTGGCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACactcaac                                                                                                <  1:774650/251‑1 (MQ=255)
                                                                                                                                                ggCTTGTGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTAt                                                                                                                                                 >  1:715696/1‑198 (MQ=255)
                                                                                                                                                    tgtgAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATacac                                                                                        <  1:702251/248‑1 (MQ=255)
                                                                                                                                                    tgtgAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATacac                                                                                        <  1:698944/248‑1 (MQ=255)
                                                                                                                                                    tgtgAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATacac                                                                                        <  1:46391/248‑1 (MQ=255)
                                                                                                                                                            atatTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCt                                                                                                            <  1:598414/223‑1 (MQ=255)
                                                                                                                                                                    gTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGttt                                                                                >  1:338830/1‑243 (MQ=255)
                                                                                                                                                                          cGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTa                                                                  >  1:838266/1‑251 (MQ=255)
                                                                                                                                                                              aaaCATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCg                                                              >  1:225144/1‑251 (MQ=255)
                                                                                                                                                                                     gCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCttt                                                       >  1:695836/1‑251 (MQ=255)
                                                                                                                                                                                            ggTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACaa                                                                                      >  1:485535/1‑213 (MQ=255)
                                                                                                                                                                                            ggTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATgg                                                                                   >  1:21709/1‑216 (MQ=255)
                                                                                                                                                                                                   aCCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTc                                                                                                                                                                                                                            >  1:375591/1‑72 (MQ=255)
                                                                                                                                                                                                      ccAATAATTGGATAACCCTCTTTGGTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACactcaact                                                                                               <  1:426297/194‑1 (MQ=255)
                                                                                                                                                                                                       cAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACaa                                                                                      >  1:386267/1‑202 (MQ=255)
                                                                                                                                                                                                       cAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCaaa                                     >  1:62922/1‑251 (MQ=255)
                                                                                                                                                                                                             ttGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCg                                                                                                                                <  1:154364/154‑1 (MQ=255)
                                                                                                                                                                                                               ggATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTcac                                                                                                       >  1:811567/1‑177 (MQ=255)
                                                                                                                                                                                                               ggATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCAc                                                  >  1:700959/1‑230 (MQ=255)
                                                                                                                                                                                                                    aCCCTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACactcaac                                                                                                >  1:669129/1‑179 (MQ=255)
                                                                                                                                                                                                                      ccTCTTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAaccac                      <  1:665090/251‑1 (MQ=255)
                                                                                                                                                                                                                       ctctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATacac                                                                                        <  1:573919/184‑1 (MQ=255)
                                                                                                                                                                                                                       ctctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAaccacc                     <  1:343947/251‑1 (MQ=255)
                                                                                                                                                                                                                        tctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAgg                                                                                                                                                           >  1:376011/1‑116 (MQ=255)
                                                                                                                                                                                                                        tctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGc                                                                     >  1:553856/1‑202 (MQ=255)
                                                                                                                                                                                                                        tctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATc                            <  1:387920/243‑1 (MQ=255)
                                                                                                                                                                                                                        tctTTGTTGTAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAaccacca                    >  1:454066/1‑251 (MQ=255)
                                                                                                                                                                                                                             gttgtAAGTGCGGTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAACCACCACCg                 >  1:837183/1‑249 (MQ=255)
                                                                                                                                                                                                                                    gTGCGGTTCGCTTACCGCGTAATTTACGGGCAATAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACGCAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGa                              >  1:429824/1‑229 (MQ=255)
                                                                                                                                                                                                                                         gTTCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAggg                                                                      >  1:107984/1‑184 (MQ=255)
                                                                                                                                                                                                                                          ttCGCTTACCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAACCACCACCGCTTTCGGTGCATAGc  <  1:234996/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                  
ATCAATGCCACGTTGACTAAAGGTTGGGAAGTATTTTTCCGATTCCGCCGTATGGTTGAACACCACGTCTAAAATCACTTCAATGCCTGCCTCATGCAAGGCTTTCACCATGTGTTTAAATTCATTTAACGGGTTCGCCATATTGGCTTGCGAGCAATATTTCGGTTCCACGGCAAACATGGCTAACGGGTTGTAACCCCAATAATTGGATAACCCTCTTTGTTGTAAGTGCGGTTCGCTTATCGCGTAATTTACGGGCAACAACTCGACTGCCGTTATACCTAACTTTTTCAAATACGCAATCGTTTGCGCATGTGCCAAACCGGCATAGGTGCCGCGTATTGTCTCTGGTAATTCCGTTTGTAATTTGGTAAAACCTTTCACACTCAACTCATACACAATGGTTTCGGTCCAGGGCGTATTCGGCGCTTTGTCACTCTGCCAGTCAAATGCACGATCAACCACCACCGCTTTCGGTGCATAGC  >  1/1294638‑1295122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑