Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,288,584 C→T intergenic (+129004/+132353) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,288,5840CT100.0% 152.5 / NA 57intergenic (+129004/+132353)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (22/35);  total (22/35)

CGTTTGCGCCGTCCAACGTACCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGCGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACTTTGTTATCGAATTTAATGT  >  1/1288338‑1288820
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            
cGTTTGCGCCGTCCAACGTACCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTgtag                                                                                                                                                                                                                                          <  1:866320/251‑1 (MQ=255)
      cgcCGTCCAACGTACCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTaagc                                                                                                                                                                                                                                     <  1:223823/250‑1 (MQ=255)
          gTCCAACGTACCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTaagcggaag                                                                                                                                                                                                                                >  1:415400/1‑251 (MQ=255)
                   aCCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTa                                                                                                                                                                                                                        >  1:626713/1‑250 (MQ=255)
                    ccTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTAcc                                                                                                                                                                                                                      <  1:148762/251‑1 (MQ=255)
                        atatTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCt                                                                                                                                                                                                                  <  1:87640/251‑1 (MQ=255)
                                   ccGTTAAGGGCAACCTTCATTTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGa                                                                                                                                                                                                        <  1:866559/250‑1 (MQ=255)
                                   ccGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGAt                                                                                                                                                                                                             <  1:755988/245‑1 (MQ=255)
                                   ccGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGa                                                                                                                                                                                                        <  1:232149/250‑1 (MQ=255)
                                                 cTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGa                                                                                                                                                                                                        <  1:572908/236‑1 (MQ=255)
                                                        ttACCGGTCCCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTc                                                                                                                                                                                  <  1:412093/251‑1 (MQ=255)
                                                                 ccggAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTaagc                                                                                                                                                                                                                                     >  1:526119/1‑191 (MQ=255)
                                                                   ggAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGAt                                                                                                                                                                                                             <  1:706805/213‑1 (MQ=255)
                                                                        cTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACAtc                                                                                                                                                                  <  1:534637/251‑1 (MQ=255)
                                                                                 ccGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTaa                                                                                                                                                         <  1:300969/251‑1 (MQ=255)
                                                                                  cGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCg                                                                                                                                                                                                                     <  1:791862/190‑1 (MQ=255)
                                                                                    ccAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTcc                                                                                                                                                                                 <  1:465892/224‑1 (MQ=255)
                                                                                          aaaTTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACCGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCgatg                                                                                                                                                <  1:166415/251‑1 (MQ=255)
                                                                                                   cGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAac                                                                                                                                       <  1:672715/251‑1 (MQ=255)
                                                                                                     gAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTaa                                                                                                                                                         >  1:416404/1‑231 (MQ=255)
                                                                                                               ccgccgGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAAt                                                                                                                            <  1:481253/250‑1 (MQ=255)
                                                                                                                     gAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCg                                                                                                                      <  1:406987/250‑1 (MQ=255)
                                                                                                                       aTGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAacac                                                                                                                                     <  1:469689/233‑1 (MQ=255)
                                                                                                                              aCTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCg                                                                                                            <  1:608501/251‑1 (MQ=255)
                                                                                                                                 gcgcCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGa                                                                                                         >  1:765189/1‑251 (MQ=255)
                                                                                                                                 gcgcCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGa                                                                                                         >  1:847623/1‑251 (MQ=255)
                                                                                                                                             cGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGa                                                                                                                                                                                                        <  1:223612/144‑1 (MQ=255)
                                                                                                                                                 gTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGaa                                                                                         >  1:754435/1‑251 (MQ=255)
                                                                                                                                                  tAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAACGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAAc                                                                                        <  1:443597/251‑1 (MQ=255)
                                                                                                                                                          aatgaatACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAAc                                                                                 <  1:680232/250‑1 (MQ=255)
                                                                                                                                                             gaatACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTgaga                                                                                                                              <  1:265398/202‑1 (MQ=255)
                                                                                                                                                             gaatACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCg                                                                                                            >  1:85221/1‑220 (MQ=255)
                                                                                                                                                                tACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGa                                                                                                                                                                                                        <  1:742668/125‑1 (MQ=255)
                                                                                                                                                                     cTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTaa                                                                                                                                                         <  1:682419/167‑1 (MQ=255)
                                                                                                                                                                     cTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCaa                                                                                                                                        <  1:720211/184‑1 (MQ=255)
                                                                                                                                                                             cGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGtt                                                              <  1:459923/250‑1 (MQ=255)
                                                                                                                                                                                   cgcAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATAc                                                        <  1:490892/250‑1 (MQ=255)
                                                                                                                                                                                   cgcAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATAc                                                        <  1:450/250‑1 (MQ=255)
                                                                                                                                                                                       aaCGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACg                                                                                                                                                       >  1:773460/1‑151 (MQ=255)
                                                                                                                                                                                             caTCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCgatga                                                                                                                                               >  1:266634/1‑153 (MQ=255)
                                                                                                                                                                                               tCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCtttttt                                           >  1:38414/1‑251 (MQ=255)
                                                                                                                                                                                                cGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTg                                          >  1:498488/1‑251 (MQ=255)
                                                                                                                                                                                                 gTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATAc                                                        >  1:237343/1‑236 (MQ=255)
                                                                                                                                                                                                 gTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGa                                         >  1:24843/1‑251 (MQ=255)
                                                                                                                                                                                                  ttattaATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAAt                                                   <  1:160407/240‑1 (MQ=255)
                                                                                                                                                                                                  ttattaATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGa                                         >  1:761012/1‑250 (MQ=255)
                                                                                                                                                                                                  ttattaATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTAGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGa                                         >  1:438237/1‑250 (MQ=255)
                                                                                                                                                                                                      taATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTaa                                    >  1:84284/1‑251 (MQ=255)
                                                                                                                                                                                                              ttGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAg                            >  1:107607/1‑251 (MQ=255)
                                                                                                                                                                                                                  cAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACg                         <  1:630225/250‑1 (MQ=255)
                                                                                                                                                                                                                     cGTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCAcc                                                                                             <  1:610803/179‑1 (MQ=255)
                                                                                                                                                                                                                      gTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACtt                    >  1:549237/1‑251 (MQ=255)
                                                                                                                                                                                                                      gTCATTAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACtt                    >  1:354221/1‑251 (MQ=255)
                                                                                                                                                                                                                          ttAATCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACTTTGtt                <  1:122540/251‑1 (MQ=255)
                                                                                                                                                                                                                            aaTCAAATGAATAGTTTGTTTTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACTTTGTTAt              >  1:34371/1‑251 (MQ=255)
                                                                                                                                                                                                                                         gtttgtttTGCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGGCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACTTTGTTATCGAATTTAATGt  >  1:164380/1‑250 (MQ=255)
                                                                                                                                                                                                                                                  gCCGTGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATAccc                                                      <  1:291400/189‑1 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                            
CGTTTGCGCCGTCCAACGTACCTAATATTAAGGCGCCGTTAAGGGCAAACTTCATGTTACCGGTACCGGAGGCTTCCGTACCCGCCAGAGAAATTTGCTCGGAAATATCCGCCGCCGGAATGATTAACTGCGCCAGACTGACGCTGTAGTTCGGAATGAATACCACTTTTAAGCGACCGCGCAAACGCACATCGTTATTAATCACGTTGGCAACGTCATTAATCAAATGAATAGTTTGTTTTGCCGCGTAGTAAGCGGAAGCGGCTTTACCGGCTAAGATAAAGACGCGCGGCTGCCAGTCTTTTTCCGGGTGCGTCAACATCTCGTTGTAACGTGCGATGATGTGCAACACGTTGAGAATTTGGCGTTTATATTCGTGAATACGTTTCACCTGAACATCAAACAAGGCGTGCGGGTCAAGTTCAATACCCAATTCTTTTTTGACGTAATTGGCAAGACGCACTTTGTTATCGAATTTAATGT  >  1/1288338‑1288820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑