Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,269,237 G→A intergenic (+109657/+151700) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,269,2370GA100.0% 51.9 / NA 21intergenic (+109657/+151700)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (11/10);  total (11/10)

GAAGTATTTTCACCTACCTCTAAAAACTCACGAATATCTCATCATCATAAACGCTCAAAAAATCAAATCTTCAAGAAATAAATTTTTTTACCCAGTCATTTTTAAAGAGAGCAAACCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATAAGTTATGCGAAATTAGTGACAAAGTAAATGAACACTACGATTTAATGAAAACACAGAGTTATTCACAGGTCACTCTTACTAGTTAAACGTTATGAAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAGAAGTGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGCCTTTAGGGGTATTTGCAGGGGCGGGAAATTT  >  1/1269026‑1269434
                                                                                                                                                                                                                   |                                                                                                                                                                                                     
gaAGTATTTTCACCTACCTCTAAAAACTCACGAATATCTCATCATCATAAACGCTCAAAAAATCAAATCTTCAAGAAATAAATTTTTTTACCCAGTCATTTTTAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTaa                                                                                                                                                                >  1:807161/1‑251 (MQ=255)
                  tctAAAAACTCACGAATATCTCATCATCATAAACGCTCAAAAAATCAAATCTTCAAGAAATAAATTTTTTTACCCAGTCATTTTTAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTgaag                                                                                                                                              <  1:313791/251‑1 (MQ=255)
                   ctAAAAACTCACGAATATCTCATCATCATAAACGCTCAAAAAATCAAATCTTCAAGAAATAAATTTTTTTACCCAGTCATTTTTAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTgaaga                                                                                                                                             >  1:352855/1‑251 (MQ=255)
                                                                                               tCATTTTTAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACg                                                                  <  1:684168/250‑1 (MQ=255)
                                                                                                  tttttAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTaa                                                                                                                              <  1:661888/187‑1 (MQ=255)
                                                                                                  tttttAAAGAGAGCAAATCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTAt                                                               >  1:732398/1‑250 (MQ=255)
                                                                                                                                        ttACCATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGGCTTTAgggg                        <  1:814500/251‑1 (MQ=255)
                                                                                                                                           ccATTTATTTTATTTAACATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGGCTTTAGGGGTAt                     >  1:334688/1‑251 (MQ=255)
                                                                                                                                                           aCATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAATATCAATAAATATTGAtt                                                                                                            >  1:281235/1‑148 (MQ=255)
                                                                                                                                                           aCATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAatat                                                                                                                 <  1:796235/143‑1 (MQ=255)
                                                                                                                                                           aCATAATATATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGGCTTTAGGGGTATTTGCAGGGGCGGGaaa     >  1:641107/1‑251 (MQ=255)
                                                                                                                                                              taataTATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAGTCAGCAGTTATTACGTGGCTTTAGGGGTATTTGCAGGGGCGGGAAAttt  >  1:358946/1‑251 (MQ=255)
                                                                                                                                                              taataTATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATc                                                 >  1:882711/1‑204 (MQ=255)
                                                                                                                                                               aataTATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTaa                                                                                                                              >  1:659191/1‑126 (MQ=255)
                                                                                                                                                               aataTATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATcagc                                              <  1:591573/206‑1 (MQ=255)
                                                                                                                                                               aataTATGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGGCTTTAgggg                        >  1:332040/1‑228 (MQ=255)
                                                                                                                                                                atatatGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTaa                                                                                                                              <  1:294688/125‑1 (MQ=255)
                                                                                                                                                                atatatGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCt                                                     <  1:413914/198‑1 (MQ=255)
                                                                                                                                                                atatatGTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAAAAATGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATc                                                 >  1:873395/1‑202 (MQ=255)
                                                                                                                                                                    atgTTATGCGAATTTAGTGACTTCGTTAATAAACGCTACGGATTAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGc                                                                                                                                     <  1:676356/112‑1 (MQ=255)
                                                                                                                                                                                                     cgctacggattAATAAAAACACAGAGTTATTCACAGGTCACTCTTACTGGTTAAACGTGATGGAAACTGAAGAAATAAAGCCTTGTAACAt                                                                                                                           <  1:502915/82‑1 (MQ=255)
                                                                                                                                                                                                                   |                                                                                                                                                                                                     
GAAGTATTTTCACCTACCTCTAAAAACTCACGAATATCTCATCATCATAAACGCTCAAAAAATCAAATCTTCAAGAAATAAATTTTTTTACCCAGTCATTTTTAAAGAGAGCAAACCTCAAATTCCCAGAAGTGACTTACCATTTATTTTATTTAACATAATATAAGTTATGCGAAATTAGTGACAAAGTAAATGAACACTACGATTTAATGAAAACACAGAGTTATTCACAGGTCACTCTTACTAGTTAAACGTTATGAAAACTGAAGAAATAAAGCCTTGTAACATCAATAAATATTGATTTATCAAGACTTATTTAGAAGTGTAAGCATAAATTCAAGCACGTATCGCATTATCTAATCAGCAGTTATTACGTGCCTTTAGGGGTATTTGCAGGGGCGGGAAATTT  >  1/1269026‑1269434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑