Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,261,469 G→T intergenic (+101889/+159468) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,261,4690GT97.4% 107.3 / NA 39intergenic (+101889/+159468)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (8/30);  total (9/30)
Fisher's exact test for biased strand distribution p-value = 2.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCACCAGAGCGCATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGGGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATACCTTGTAAAACGACCGCAC  >  1/1261228‑1261712
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      
tCACCAGAGCGCATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGag                                                                                                                                                                                                                                               >  1:726061/1‑250 (MQ=255)
   ccAGAGCGCATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGcc                                                                                                                                                                                                                                            <  1:498949/251‑1 (MQ=255)
       agCGCATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCacgg                                                                                                                                                                                                                                        >  1:653368/1‑248 (MQ=255)
           cATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑GAAt                                                                                                                                                                                                                                  >  1:53743/1‑251 (MQ=255)
                   gcgTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACACGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCACGCCGGTGGCGCTGCCGAGTTGGCGCATCCGTTGCGTTACACCATGCCTATGAAATGGGAGCGAAAACTAGCGGAGAATTTTAAAAGTTGGGGCggcgctgcccccgaaattctcgggt                                                                                                                                                                                                                            >  1:3570/1‑228 (MQ=255)
                                cAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTcc                                                                                                                                                                                                            <  1:139029/251‑1 (MQ=255)
                                                              gCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGGCC‑TGG‑AAATTTTCGGGTTCGGGC‑GACCTCCCCGtcaattttaatttcttgttaaaatagg                                                                                                                                                                              >  1:394231/1‑236 (MQ=255)
                                                               ccTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGGCC‑TGGAAAATTTCCGG‑TGCGGGCAAACG‑CCCGATCAATTTCAAATGTTGGTtaaaaagg                                                                                                                                                                               >  1:823985/1‑245 (MQ=255)
                                                               ccTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑GAATTTTCGGGTTCGGGG‑AACGTCCCCAtcaattttaaattctggggaaacaaggg                                                                                                                                                                             >  1:121618/1‑230 (MQ=255)
                                                                           aTTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCaa                                                                                                                                                                 <  1:896627/251‑1 (MQ=255)
                                                                           aTTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAAATTTCGGTTGCGGGG‑AACGTCCCCATCAAATTTTATTGCTGGGaaaaa                                                                                                                                                                                  >  1:599846/1‑233 (MQ=255)
                                                                                                   aTGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGc                                                                                                                                                            <  1:274525/232‑1 (MQ=255)
                                                                                                                 tGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTTCTTg                                                                                                                           <  1:453056/251‑1 (MQ=255)
                                                                                                                                 ccaccaTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAAc                                                                                                             <  1:36369/249‑1 (MQ=255)
                                                                                                                                 ccaccaTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACt                                                                                                            <  1:407850/250‑1 (MQ=255)
                                                                                                                                    ccaTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:64629/251‑1 (MQ=255)
                                                                                                                                    ccaTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:713125/251‑1 (MQ=255)
                                                                                                                                    ccaTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:453402/251‑1 (MQ=255)
                                                                                                                                     caTTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGaa                                                                                                       <  1:551225/251‑1 (MQ=255)
                                                                                                                                             ttattCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGAtt                                                                                                                                        <  1:46811/210‑1 (MQ=255)
                                                                                                                                             ttattCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:683686/242‑1 (MQ=255)
                                                                                                                                              tattCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAAc                                                                                              <  1:804412/251‑1 (MQ=255)
                                                                                                                                                       aGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:197474/232‑1 (MQ=255)
                                                                                                                                                                       gtgtTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGGTGCCACGGG‑AAATTT‑CGGTTGCGGGC‑CACGTCCCCATCAATTTCAATTTTTGGGAAAAATGGCTGAGGAACACCAATTGGCGGGGTCGATGGGGTCGGGTTTTTTCTTTTCTTTCGCGTGGGGGGGAATAGGGAAAATAAAAACCCCGCCGGGAAACACTCCTTTTGt                                                                     >  1:887178/1‑251 (MQ=255)
                                                                                                                                                                                        gCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCttt                                                                        <  1:174095/231‑1 (MQ=255)
                                                                                                                                                                                        gCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAat                                                              <  1:5708/241‑1 (MQ=255)
                                                                                                                                                                                           ttACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACT‑AAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGAcc                                                 <  1:719103/250‑1 (MQ=255)
                                                                                                                                                                                                     aCTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAAc                                       <  1:555276/251‑1 (MQ=255)
                                                                                                                                                                                                     aCTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAAc                                       <  1:12966/251‑1 (MQ=255)
                                                                                                                                                                                                      cTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTcc                                                                           <  1:805364/214‑1 (MQ=255)
                                                                                                                                                                                                       tATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGa                                                                                                        <  1:449233/184‑1 (MQ=255)
                                                                                                                                                                                                           aaaTGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAAcagcag                                  <  1:21134/250‑1 (MQ=255)
                                                                                                                                                                                                                      aaaaCTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAAt                      <  1:670470/251‑1 (MQ=255)
                                                                                                                                                                                                                        aaCTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATAc                    <  1:68305/251‑1 (MQ=255)
                                                                                                                                                                                                                        aaCTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATAc                    <  1:620894/251‑1 (MQ=255)
                                                                                                                                                                                                                          cTAGCGGAGAATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTc                                                                    <  1:738375/201‑1 (MQ=255)
                                                                                                                                                                                                                                 agaATTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATACCTTGTaaa            <  1:161599/250‑1 (MQ=255)
                                                                                                                                                                                                                                   aaTTTTAAAAGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATACCTTGTaaaa           <  1:86106/249‑1 (MQ=255)
                                                                                                                                                                                                                                          aaaGTTGTGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATACCTTGTAAAACGACCGCAc  <  1:588240/251‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      
TCACCAGAGCGCATTATGCGCGTCATTTAGTGCAAATCGGCAAAGTCTCTAACGACGGGCAAGCCTTTAAACGTTATTTGGGACAGGGCAAGTCTGCTTATGTGAAGCCGCAATGGGCGGACATTCCAACCACCATTGACATTATTCACCAAGCCGGTGGCGCTGCCGTGTTGGCGCATCCGTTGCGTTACACCATGACTATGAAATGGGTGCGAAAACTAGCGGAGAATTTTAAAAGTTGGGGCGGTGATGCCA‑TGG‑AAATTTCCGGTTGCGGGC‑AACGTCCCGATCAATTTCAATTGCTGGTAAAACTGGCTGAGGAACACCAATTGGCGGGTTCGATGGGATCGGATTTTCACTTTCCTTGCGCGTGGGTGGAACTAGGAAAACTAAAACCGCTGCCGGAACACATTCCTTTTGTCTTAAATATAAAAAATGACCTTGCCTGAACAGCAGTCCATTAAAAATACCTTGTAAAACGACCGCAC  >  1/1261228‑1261712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑