| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,241,304 | G→A | intergenic (+81724/+179633) | unknown → / ← unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,241,304 | 0 | G | A | 93.2% | 169.8 / NA | 74 | intergenic (+81724/+179633) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base G (0/5); new base A (45/24); total (45/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGACCTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTGGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTACCGATAAAAATGACCCGCTACATTTTGATTA > 1/1241059‑1241550 | cGACCTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAgcgc < 1:755533/250‑1 (MQ=255) aCCTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCggg > 1:240488/1‑251 (MQ=255) ccTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCgggg > 1:122565/1‑251 (MQ=255) cTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGa > 1:354140/1‑251 (MQ=255) ggATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCgtt < 1:640239/250‑1 (MQ=255) gTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCg < 1:186575/244‑1 (MQ=255) aTCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATtct > 1:292901/1‑250 (MQ=255) ccGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGC‑GGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAcc < 1:239458/251‑1 (MQ=255) gATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc < 1:672834/250‑1 (MQ=255) gATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc < 1:328527/250‑1 (MQ=255) gATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc < 1:853394/250‑1 (MQ=255) gATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc < 1:247427/250‑1 (MQ=255) tatTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAAc < 1:793579/251‑1 (MQ=255) gTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAcc > 1:412619/1‑237 (MQ=255) gTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCAt > 1:177880/1‑251 (MQ=255) tCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTAc < 1:483985/251‑1 (MQ=255) tCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTAc < 1:844099/251‑1 (MQ=255) cgccggcgccggGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACtt > 1:582476/1‑251 (MQ=255) cgccggGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑c < 1:159610/251‑1 (MQ=255) gggTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGAATCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑cta > 1:4617/1‑249 (MQ=255) ggTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑ctacta > 1:565691/1‑251 (MQ=255) gTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAg > 1:238107/1‑251 (MQ=255) ttttACCGATGTTTTATTTTCAGTTTTTTGCTTTTCTGGGCGGCATTCCCCCGTTATTTTGCTTTTCCCTTATCGCAACCCGTAGAAAAGCCCAAGCCCCGTTTCTCTTTCTCGTTTTATCGGGAT‑TTGCCATCGGTTCTTTG‑TTTAGCGGGGGGTTTTCGTTGTTAAAAATTCTCGCCGATCC‑TTTTCCCCACCTCCCTTCCATTATTTTTTGG‑CTACTGGGAAGCTTAACCGCCATTAGTCCGCAAGAt < 1:25425/250‑1 (MQ=255) tgtttttttATTCATTTTTTTCCCTTTTTGGGCGGCTTTGCCAGGTTATTTTGCTTTTCCCTTACCGCACCCCGTAGAAAAGCCCAAGCCCCGATTCTCTTTCTCGTATTATGGGGAA‑TTGCCTTCGTTTCTTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTCCCCAACTGCCTTCCATTTCTTTTGGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGc < 1:715454/247‑1 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGa > 1:500806/1‑214 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAg > 1:683492/1‑216 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAg < 1:190736/216‑1 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGc > 1:770406/1‑217 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCg > 1:402170/1‑224 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCaa > 1:681538/1‑250 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCaa > 1:234886/1‑250 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCaa > 1:645367/1‑250 (MQ=255) gTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCaa > 1:818097/1‑250 (MQ=255) tttATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAcc < 1:688419/179‑1 (MQ=255) tttATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCAtt > 1:735569/1‑227 (MQ=255) atatTCGGTTTTTGGCTTTTCTGGGCGGCTTTCCCACGGTATTTTGCTTTTCCCTTACCGCACCCCGTAGCAAAGACCAAGCCCCGATTCTCTTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGGGGGGATTTCGTTGTTAAAAATTCTCGCCGATCC‑TTTTCCCCACCTGCCTTCCATTCCTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTc < 1:47038/228‑1 (MQ=255) gCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc > 1:774591/1‑170 (MQ=255) gCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGAttt > 1:441398/1‑251 (MQ=255) ccTTTCGTGGCGCCATGGCCAGGGTTTTTGGCGTTCCCCTTACCGCACCCCGTAGCAAAGACAAAGCCCCGTTTCTCGTTCTCGTATTATCGGGAA‑TTGCCGTCGTTTCTTTG‑CTTAGCGGGGGGTTTTCTTTGTTAAAAATTCTCGCCGATCC‑TTTTCCCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTc < 1:574818/251‑1 (MQ=255) gcggcTTTGCCCCGTTTTTTTGCTTTCCCCTTACCGCACCCCGTAGCAAAGCCCAAGCCCCTTTTCTCTTTTTCTTATTTTCGGAAA‑TTCCCGTGGTTTCGTTC‑CTTAGCGGGGGGTTTTCTTTTTTAAAATTTCCCGCCG‑TCCTTTTTCCCCAACTGCCTTCCATT‑TTTTTTGGCCTACTAGGAAGTTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGgc < 1:898210/250‑1 (MQ=255) ggctttgccgggtttttttGCTTTTCCCTTACCGCACCCCGTAGAAAAGACAAAGCCCCGTTTCTCTTTCTCTTTTTATGGGGAA‑TTGCCATCGGTTCGTTG‑CTTGGCGGGGGGTTTTCGTTGTTAAAATTTCTCGCCGATCT‑TTTTCCCCAACTGCCTTCCATTCCTTTTGGG‑CTACTAGGAAGTTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGgcgc < 1:210492/235‑1 (MQ=255) ccacgtttttttGCTTTCCCCTTACCGCACCCCGTAGCAAAGCCCAAGCCCCGTTTCTCTTTCTGGTTTTATCGGAAA‑TTCCCATGGGTTCTTTG‑CTTGGCGGGGGTTTTTCTTTTTTAAAATTTCTCGCCGTTCT‑TTTTCCCCACCTGCTTTCCTTTTCTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTAttt < 1:33478/243‑1 (MQ=255) gTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGAt > 1:563796/1‑198 (MQ=255) gTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTa > 1:3390/1‑249 (MQ=255) cccTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTATTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTa > 1:706048/1‑251 (MQ=255) cttaccgcacccggaagaaaaGACAAAGCCCCGTTTCTCGTTCTCGTTTTATGGGGAT‑TGGCCTTCGTTTCTTTT‑CTTAGCGGGGGGTTTTCTTTGTTAAAATTTCTCGCCGATCT‑TTTTCCCCACCTGCCTTCCATTATTTTTGGG‑CTACTAGAAAGTTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTaaa < 1:252924/233‑1 (MQ=255) aTCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc > 1:554106/1‑121 (MQ=255) aTCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCaa > 1:807108/1‑189 (MQ=255) aTCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAAttt > 1:716229/1‑251 (MQ=255) tCGCACCCCGTAAAAAAGCCCAAGCCCCGTTTCTCGTTCTCTTTTTATCGGAAA‑TTGCCATGGGTTCGTTG‑CTTAGCGGGGGGTTTTCTTTGTAAAAAATTCTCGCCGATCT‑TTTTCCCCACCTGCCTTCCATTTCTTTTTGC‑CTACTAGGAATCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGgcgc < 1:58082/219‑1 (MQ=255) tCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCgtt < 1:759993/91‑1 (MQ=255) cGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTg > 1:279260/1‑250 (MQ=255) aCCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGcttt > 1:714374/1‑250 (MQ=255) cccGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGcttt > 1:411147/1‑249 (MQ=255) gTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCAt > 1:891582/1‑124 (MQ=255) tAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTag > 1:126941/1‑251 (MQ=255) gCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTAccc > 1:475427/1‑108 (MQ=255) gaccaagaccCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGgaaga > 1:67013/1‑251 (MQ=255) ccccGTTTCTCTTTCTCGTATTATCGGGAA‑TTGCCATCGGTTC‑TTGTCTTAGCGCGGGGTTTTCTTTGTTAAAATTTCTCGCCGTTCT‑TTTTCCCCACCTGCCTTCCATTTTTTTTTGG‑CTACTAGGAAGTTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGaagaagaag < 1:705909/248‑1 (MQ=255) accCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAgcg > 1:662102/1‑251 (MQ=255) aTTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTc > 1:157750/1‑142 (MQ=255) aTTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTAc > 1:757479/1‑202 (MQ=255) aTTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAg > 1:355704/1‑251 (MQ=255) tttctcgtTTTAT‑GGGAATTTGCCATGGGTTCGTTG‑CTTGGCGGGGGTTTTTCTTTGTTAAAATTTCTCGCCGTTCT‑TTTTCCCCACCTGCCTTCCTTTTTTTTTTGG‑CTACTAGGAAGTTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTgg < 1:662844/250‑1 (MQ=255) ttctcgtATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTc > 1:760163/1‑173 (MQ=255) ttctcgtATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTgg > 1:509784/1‑250 (MQ=255) tctcttattgtggggAT‑TTGCCATCGGTTGTTTG‑CTTGGCGGGGGGTTTTCGTTGTTGAAATTTCTCGCCGTTCT‑TTTTACCCAACTGCCTTCCTTTTTTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCg < 1:219842/239‑1 (MQ=255) gtATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTAc > 1:875658/1‑250 (MQ=255) atCGGGAA‑TTGCCATCGGTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCg > 1:612805/1‑242 (MQ=255) aatttGCCTTCGTTTCGTTG‑CTTGGCGCGGGGATTTCTTTGTTGAAAATTCTCGCCTTTCT‑TTTTCCCCACCTGCCTTCCATTTTTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGgcgc < 1:628206/165‑1 (MQ=255) gTTCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGc > 1:604124/1‑224 (MQ=255) ttCGTTG‑CTTAGCGCGGGTATTTCGTTTTTAAAAATTCTCGCCGATCC‑TTTTCCCCACCTGCCTTCCATTACTTTTTGC‑CTACAGGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTACCGATAAAAATGACCCGCTACAttt < 1:577612/251‑1 (MQ=255) tCGTTG‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTACCGATAAAAATGACCCGCTACAtttt > 1:372996/1‑251 (MQ=255) g‑CTTAGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTACCGATAAAAATGACCCGCTACATTTTGatta > 1:367071/1‑251 (MQ=255) | CGACCTATCAGGGGATGTTTAAAAATCCATTGGTTTCGCCGGATATTTTGGGCGTATCCGCCGGCGCCGGGTTTGGGGCGTCACTGGCAATTTTCTACAATTTACCGATGTTTTATATTCAGCTTTTTGCCTTTCTTGGCGGCATTGCCACGGTATTTTGCGTTTCCCTTATCGCAACCCGTAGCAAAGACCAAGACCCGATTCTCGTTCTCGTATTATCGGGAA‑TTGCCATCGGTTCGTTG‑CTTGGCGCGGGGATTTCGTTGTTGAAAATTCTCGCCGATCC‑TTTTACCCAACTGCCTTCCATTACTTTTTGG‑CTACTAGGAAGCTTAACCGCCATTAGTCCGCAAGATGTGTTGCAACTGGCGCCGATTTTATTGCTCGGTATGGCGCCGCTATTTTTACTTCGTTGGCGTTTAAATTTGCTTTCTTTAGAGGAAGAAGAAGCGCGCAGCCTTGGCGTACCGATAAAAATGACCCGCTACATTTTGATTA > 1/1241059‑1241550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |