Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,205,490	C→T	intergenic (+45910/+215447)	unknown → / ← unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,205,490	0	C	T	100.0%	202.3 / NA	75	intergenic (+45910/+215447)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/42);  total (33/42)

ATCAATCACAAGGGCAACTTCGTGCCGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCCCCCGACAATCAGGAGGACGCGGAAGAATATTCAAAAGTGCTGGGCAATCGTACTGTAGATAAATTAAGCCATAGTCGCGGAAAAACGTCCAGTCACAGTATTACCGACCATGGGCGACCGTTGCTTTTACCACAGGAATTTAGACTAATCGGAGAATTTAAAGAAGTGGTGATGTTAAACAACAGTAAACCGATACTGTGTAATAAGGCGGTGTACTACAACGATCCTTATGCCGACCA  >  1/1205245‑1205584                                                                                                                                                                                                                                                      |                                                                                               atcaatcaCAAGGGCAACTTCGTGCCGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATc                                                                                           <  1:881551/251‑1 (MQ=255)       cacaAGGGCAACTTCGTGCCGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATc                                                                                           >  1:492632/1‑245 (MQ=255)            gggCAACTTCGTGCCGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTaa                                                                                >  1:40228/1‑251 (MQ=255)                         ccGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATg                                                                   <  1:264383/251‑1 (MQ=255)                           gATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGtt                                                                 >  1:412564/1‑251 (MQ=255)                            aTAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGtt                                                                 <  1:415687/250‑1 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:381475/1‑249 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:32122/1‑249 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:752253/1‑249 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:625294/1‑249 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:688951/1‑249 (MQ=255)                                gCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            >  1:186147/1‑249 (MQ=255)                                  cTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAaataac                                                          <  1:578807/251‑1 (MQ=255)                                  cTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAaataac                                                          <  1:309491/251‑1 (MQ=255)                                  cTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAaataac                                                          <  1:341106/251‑1 (MQ=255)                                            cGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGa                                                >  1:314932/1‑251 (MQ=255)                                                       gTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTCCTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaat                                                             >  1:434323/1‑226 (MQ=255)                                                        tGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAGCCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTTCTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgtaat                                     <  1:424435/250‑11 (MQ=255)                                                        tGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCATAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgtaat                                     <  1:486228/250‑11 (MQ=255)                                                        tGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgtaat                                     <  1:371289/250‑11 (MQ=255)                                                        tGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgtaat                                     <  1:309138/250‑11 (MQ=255)                                                            aaaGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGTTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:451822/251‑1 (MQ=255)                                                            aaaGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:569444/251‑1 (MQ=255)                                                            aaaGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:48082/251‑1 (MQ=255)                                                            aaaGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:286263/251‑1 (MQ=255)                                                            aaaGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:575570/251‑1 (MQ=255)                                                              aGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATc                                                                                           >  1:178008/1‑190 (MQ=255)                                                                  aTCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATg                                                                   >  1:91508/1‑210 (MQ=255)                                                                  aTCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:894013/245‑1 (MQ=255)                                                                   tCCTGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAaag                                                                              <  1:826163/198‑1 (MQ=255)                                                                      tGGATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGtattac                      <  1:371636/251‑1 (MQ=255)                                                                       ggATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACa                     >  1:155298/1‑251 (MQ=255)                                                                       ggATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACa                     >  1:369443/1‑251 (MQ=255)                                                                       ggATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACa                     >  1:197858/1‑251 (MQ=255)                                                                       ggATAATATCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACa                     >  1:624122/1‑251 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:103576/250‑1 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:749766/250‑1 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:718894/250‑1 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:37047/250‑1 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAAc                   <  1:530609/251‑1 (MQ=255)                                                                         ataataTCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAAc                   <  1:848076/251‑1 (MQ=255)                                                                            atatCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaat                                                             >  1:568855/1‑205 (MQ=255)                                                                              atCGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATcc              <  1:769815/251‑1 (MQ=255)                                                                                cGCCTGTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAgc                                                       <  1:254296/208‑2 (MQ=255)                                                                                     gTAAAATTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAAc                                                   >  1:7716/1‑207 (MQ=255)                                                                                          aTTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTAttttataga  >  1:420535/1‑243 (MQ=255)                                                                                          aTTCTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGCAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGtattac                      >  1:287737/1‑231 (MQ=255)                                                                                             cTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaata                                                            <  1:327104/190‑3 (MQ=255)                                                                                             cTATATGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:858786/230‑1 (MQ=255)                                                                                               atatGCACCCGACAACCAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgt                                        <  1:894996/208‑8 (MQ=255)                                                                                                            aaccAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:684656/212‑1 (MQ=255)                                                                                                              ccAGGAGGACGCAGAAGAATATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGtattac                      >  1:79394/2‑211 (MQ=255)                                                                                                                         cagaagaaTATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    >  1:464836/3‑202 (MQ=255)                                                                                                                           gaagaaTATTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaat                                                             >  1:36872/1‑158 (MQ=255)                                                                                                                                atatTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCACAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                >  1:514593/1‑183 (MQ=255)                                                                                                                                  atTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatg                                         <  1:500270/172‑7 (MQ=255)                                                                                                                                  atTCTAAAGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTAttttat     >  1:659792/1‑203 (MQ=255)                                                                                                                                       aaaGTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatg                                         >  1:595757/1‑161 (MQ=255)                                                                                                                                          gTGCTAGGTAATCGCACTGTAAATAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTaaat                                                             >  1:805268/1‑143 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAgtgg                                                                        <  1:825948/111‑1 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAgtgg                                                                        <  1:205329/111‑1 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                >  1:308318/5‑155 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:491100/151‑1 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGtattac                      <  1:795909/161‑1 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    >  1:790102/5‑167 (MQ=255)                                                                                                                                                            gtaaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTAttttatag   >  1:200735/5‑177 (MQ=255)                                                                                                                                                              aaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatgt                                        >  1:378397/3‑138 (MQ=255)                                                                                                                                                              aaaTAAATTAAGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAtta                                             <  1:23303/138‑3 (MQ=255)                                                                                                                                                                       aaGCCATAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGc                                <  1:734341/144‑1 (MQ=255)                                                                                                                                                                            aTAGTCGAGGTAAAACATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    >  1:185440/1‑151 (MQ=255)                                                                                                                                                                                   aggtaaaaCATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATg                                                                   <  1:796441/93‑1 (MQ=255)                                                                                                                                                                                   aggtaaaaCATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGtaataa                                   <  1:806651/125‑1 (MQ=255)                                                                                                                                                                                   aggtaaaaCATCCAGTCACAGTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACAACGATCCTTAtttta      <  1:114465/154‑5 (MQ=255)                                                                                                                                                                                                       gTATTACCGACCATGGGCGACCATTACTTTTACCGCAGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGATTATATGTAATAAGGCAGTGTATTACaa                    <  1:760081/124‑1 (MQ=255)                                                                                                                                                                                                                                          caGGAGTTTAGATTAATCGGCGAATTTAAAGAAGTGGTGATGTTAAATAACAGCAAACCGAttatatg                                         <  1:395785/68‑7 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                               ATCAATCACAAGGGCAACTTCGTGCCGATAAGCCTAATGGTTACGGTAAAGATGGTGCTAAAGCTATCCTGGATAATATCGCCTGTAAAATTCTATATGCCCCCGACAATCAGGAGGACGCGGAAGAATATTCAAAAGTGCTGGGCAATCGTACTGTAGATAAATTAAGCCATAGTCGCGGAAAAACGTCCAGTCACAGTATTACCGACCATGGGCGACCGTTGCTTTTACCACAGGAATTTAGACTAATCGGAGAATTTAAAGAAGTGGTGATGTTAAACAACAGTAAACCGATACTGTGTAATAAGGCGGTGTACTACAACGATCCTTATGCCGACCA  >  1/1205245‑1205584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑