| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,203,138 | C→T | intergenic (+43558/+217799) | unknown → / ← unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,203,138 | 0 | C | T | 95.1% | 199.8 / NA | 82 | intergenic (+43558/+217799) | unknown/unknown | tRNA‑Val‑GAC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (41/37); minor base G (0/4); total (41/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAAACAGAAATAGGAGGTATAAATAATGGTCATAAACTCTTCCGGCGATGTATCAATTTTACTTCATGCCAATAAATTATTCGGAGAATTGCTCGAAGACGAAGCCATTACAAAAATTGCGATTAATCGCCCCGGTGAAATTTTCTTTGAAAAAAAAGGCGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTCGGGCGTTAGCCAAGTATCGCGGGGATTATATCAGTGATACCAAACCAATTTTATCTGCGGTATTACCGAACGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACCGGACACTACTGGAAATTTATCATAAGGG > 1/1202900‑1203380 | tGAAACAGAAATAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc < 1:624961/251‑1 (MQ=255)tGAAACAGAAATAGGAGGTATAAACAATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc < 1:347934/251‑1 (MQ=255) cAGAAATAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTatat < 1:264075/245‑1 (MQ=255) gAAATAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTgggg < 1:762760/236‑1 (MQ=255) aaaTAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg < 1:515903/247‑1 (MQ=255) aaaTAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg < 1:698011/247‑1 (MQ=255) aaaTAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTCATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg < 1:633308/247‑1 (MQ=255) tAGGAGGTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATactaa < 1:669283/251‑4 (MQ=255) gTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTatat > 1:347857/1‑233 (MQ=255) gTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc > 1:403637/1‑234 (MQ=255) gTATAAACCATGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATactaaaccgat > 1:147748/1‑248 (MQ=255) accatGGCCATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTAt > 1:553197/4‑250 (MQ=255) gccATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATac > 1:603709/3‑230 (MQ=255) ccATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTa > 1:497850/2‑251 (MQ=255) ccATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTa > 1:41684/2‑251 (MQ=255) cATAAACTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTAt < 1:38515/251‑1 (MQ=255) aaaCTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc < 1:705439/217‑1 (MQ=255) aaaCTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGa < 1:694050/222‑1 (MQ=255) aaaCTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTAc < 1:501238/251‑1 (MQ=255) aaaCTCTTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTAc < 1:743598/251‑1 (MQ=255) ctTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGacc < 1:760758/251‑3 (MQ=255) ctTCCGGCGATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTAC‑‑‑AGTTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCgg > 1:415731/1‑250 (MQ=255) gATGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg > 1:98157/1‑208 (MQ=255) aTGTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATacta < 1:500465/213‑3 (MQ=255) gTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATactaaac > 1:827752/1‑214 (MQ=255) gTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGa > 1:884028/1‑250 (MQ=255) gTATCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGa > 1:236705/1‑250 (MQ=255) aTCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg > 1:762337/1‑203 (MQ=255) aTCAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGacac < 1:675703/251‑1 (MQ=255) cAATTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAg > 1:422789/1‑251 (MQ=255) aTTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTg < 1:116407/199‑1 (MQ=255) aTTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGat < 1:324075/251‑1 (MQ=255) aTTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGat < 1:351912/251‑1 (MQ=255) aTTTCACTCCATGCCAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGat > 1:49024/1‑251 (MQ=255) ccAATAAATTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc > 1:605042/1‑182 (MQ=255) aaaTTATTCGGAAAATTGCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATc > 1:650460/1‑177 (MQ=255) gCTCGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTAttc > 1:563325/1‑221 (MQ=255) ccGAAGGCGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAACCCGATTTTATCTGCGGTATTCCCGACGGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGt < 1:183477/250‑1 (MQ=255) cGAAGCCATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTAAACAAAAAGGTGTATGGCATTATCAAGACGCCCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCTTTAGCCAAGTATCGTGGGGATTATATCAGTGATACAAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACgg < 1:516806/251‑1 (MQ=255) cGAAGCAATAACAGAAAGTGCGATTAATCGCCCGGGTGAAATTTTTTTTAAACAAAAGGGTGTATGGCATTATAAAGACGCTCCGCATATTACTTATGATTTATGTGTTTCTTTTGCTAGGGCGTTAGCCAAGTATGGTGGGAATTATATCAGTGATACAAAACGGTTTTTATCGGCGGTATTCCCGCCCGGGGAGCGGACACAGATTATTCTCCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACgg < 1:313833/251‑1 (MQ=255) aGCCATTACAGAAATTGCGATTAATCGACCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGGTTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACgggg > 1:81625/1‑248 (MQ=255) ccATTACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGa < 1:242152/223‑1 (MQ=255) ttACAGAAATTGCGATTAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAg < 1:670842/145‑1 (MQ=255) tAATCGTCCCGGTGAAATTTTCTTTGAACAAAAAGGTGTAGGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTTTTTTGCTAGGGCGTTAGCCAAGTATCGGGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGGGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCttttt < 1:148260/251‑1 (MQ=255) gtcccGGTAAAATTTTCTTTGAAAAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTATTTATGTTTTATGTGTTTTTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGTTTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCtttttt < 1:824531/245‑1 (MQ=255) cccGGTGAAATTTTCTTTGAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGAc > 1:219327/1‑249 (MQ=255) aaTTTTCTTTAAACAAAAAGGTGTATGGCATTATCAAGACGCTCCGCATATTATTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGattatt < 1:667276/251‑1 (MQ=255) acaaaaaGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACg > 1:410046/3‑251 (MQ=255) aaagggtgTATGGCATTATCAAGACTCTGCGAATATTTCTTATGATTTGTGTGATTCTTTTGCTAGGGGGTTAGCAAAGTATCGTGGGGATTATATCAGTGATACTAATCCGATTTTATCGGCGGTATTGCCGACCGGCGAGCGGACAGATATTATTCTCCGGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCt < 1:862818/244‑1 (MQ=255) aaaaGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTatat > 1:102144/1‑96 (MQ=255) aaaaGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGAttatta > 1:164953/1‑237 (MQ=255) aaaaGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACgg > 1:703281/1‑249 (MQ=255) aaaaGGTGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACgg > 1:549671/1‑249 (MQ=255) gtgTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAg < 1:339556/92‑1 (MQ=255) gtgTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATactaaac > 1:672353/3‑105 (MQ=255) gTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTc > 1:192166/1‑209 (MQ=255) gCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTAc > 1:855724/1‑183 (MQ=255) tATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGAttatta > 1:822154/1‑221 (MQ=255) tATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTAt > 1:91388/1‑251 (MQ=255) tATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTAt > 1:840678/1‑251 (MQ=255) tATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGGGGGGATTATATCAGTGATACTAAACCGTTTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTc < 1:210551/200‑1 (MQ=255) aTCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTAt > 1:601011/1‑250 (MQ=255) aaGACGCTCCGCATATTATTTATGATTTATGTGTTTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGTTTATATCAGTGATACAAAACCGTTTTTATCTGCGGTATTACCGACCGGCGAGGGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGt < 1:219757/170‑1 (MQ=255) gCTCCGCATATTACTTATGATTTATGTGATTTTTTTGCTAGGGCGTTAGCAAAGTATCGGGGGGATTATATCAGTGATACTAAACCGTTTTTATCTGCGGTATTCCCGACGGGGGGGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTAc < 1:371532/170‑1 (MQ=255) ccGCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCTAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGaaaa > 1:260284/1‑251 (MQ=255) gCATATTACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTAc > 1:107738/1‑208 (MQ=255) tattatTTATGTTTTATGTGATTTTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCGGTGATCCTAAACCTATTTTATCTGCGGTATTACCGCCCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAAc < 1:773714/173‑1 (MQ=255) ttatttATGTTTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACAAAACCGTTTTTATCTGCGGTATTCCCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTAc < 1:568366/199‑1 (MQ=255) ttACTTATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTAttc > 1:168994/1‑123 (MQ=255) agttATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGAc > 1:587945/3‑236 (MQ=255) tttATGATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAACCCGATTTTATCTGCGGTATTACCGCCCGGCGGGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTAc < 1:624721/199‑1 (MQ=255) gATTTATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGAc > 1:807235/1‑230 (MQ=255) ttATGTGATTCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTAc > 1:849132/1‑149 (MQ=255) tCTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTc > 1:26571/1‑233 (MQ=255) cTTTTGCTAGGGCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTAc > 1:316279/1‑182 (MQ=255) ttttGCTAGGGCGTTAGCCAAGTATCGGGGGGATTATATCAGTGATACTAAACCGATTTTATCGGCGGTATTACCGCCCGGCGAGCGGACACAGATTTTTCTCCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACactac < 1:476477/251‑1 (MQ=255) acGGGCGTTAGCCAGGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACGGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGaa < 1:575718/249‑1 (MQ=255) ggCGTTAGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAAttt > 1:893816/1‑251 (MQ=255) aGCCAAGTATCGTGGGGATTATATCAGTGATACTAAACCGTTTTTATCTGCGGTATTACCGACCGGCGAGCGGACAAAATTTATTCTCCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGAc < 1:136030/226‑1 (MQ=255) gCCAAGTATCGTGGGGATTATATCAGTGATACTAACCCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTCCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGaaa < 1:866800/205‑1 (MQ=255) cAAGTATCGTGGGGATTATATCAGTGATACTAAACCGATTTTATCTGCGGTATTACCGACCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGaa < 1:852425/238‑1 (MQ=255) aaGTATGGTGGGGATTATATCAGTGATACTAACCCTTTTTTATCTGCGGTATTACCGCCCGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACTGGACACTACTGGAAATTTATCATAAggg < 1:109856/251‑1 (MQ=255) | TGAAACAGAAATAGGAGGTATAAATAATGGTCATAAACTCTTCCGGCGATGTATCAATTTTACTTCATGCCAATAAATTATTCGGAGAATTGCTCGAAGACGAAGCCATTACAAAAATTGCGATTAATCGCCCCGGTGAAATTTTCTTTGAAAAAAAAGGCGTATGGCATTATCAAGACGCTCCGCATATTACTTATGATTTATGTGATTCTTTTGCTCGGGCGTTAGCCAAGTATCGCGGGGATTATATCAGTGATACCAAACCAATTTTATCTGCGGTATTACCGAACGGCGAGCGGACACAGATTATTCTTCCGCCCGCCAGTGAACGGGAAACCATCAGTATTACGGTGCGAAAACCGAATAAGTCTTTTTTTGACCTGGATTATTACATCAACAACGGCTTTTTTAGTCGTGTTATCAAGACGGAAAATCGTTTGTCAGATGATGACCGGACACTACTGGAAATTTATCATAAGGG > 1/1202900‑1203380 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |