Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,199,211 A→G intergenic (+39631/+221726) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,199,2110AG100.0% 175.9 / NA 61intergenic (+39631/+221726)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/31);  total (30/31)

CTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTATTGGATTCAGTTAGTCAATCTATGAGTAGCAATTTTGCTAACTCACTTTTTACAATTATTGGCGTAACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAGATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGCCACAAAAATGATCATTGTAGCATTTATGATGAATTATGGAGGGTATCTGGATAACTCTTTAGCGATAATTGATGATCTCAAAACTAGCTTAACCGGCTTTACCGGAAACGGTATAGCCGGTTTAATGGATGACCAATTGGAATTAGGATCGGATATTGCTGGTCAACTCTTTGATCTAGATAAATCTAAATATGTCCCCTTAGAAGGTGGAATTGCTTCATTTCTTGCCTGGATTGGTGTAGCAGTATCTTTATTTGTGCCATT  >  1/1198979‑1199456
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     
cTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTAt                                                                                                                                                                                                                                     <  1:402433/251‑1 (MQ=255)
  aaTTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgg                                                                                                                                                                                                                                   <  1:400285/251‑1 (MQ=255)
      aGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgggggg                                                                                                                                                                                                                               >  1:417582/1‑251 (MQ=255)
       ggTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgggg                                                                                                                                                                                                                                 <  1:689464/248‑3 (MQ=255)
              aTTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCtaga                                                                                                                                                                                                                       <  1:117896/251‑4 (MQ=255)
               ttATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGAt                                                                                                                                                                                                                      <  1:142177/251‑1 (MQ=255)
               ttATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGAt                                                                                                                                                                                                                      <  1:33248/251‑1 (MQ=255)
                 aTGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATaa                                                                                                                                                                                                                    >  1:724366/1‑251 (MQ=255)
                  tGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAAc                                                                                                                                                                                                                   <  1:608627/251‑1 (MQ=255)
                  tGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAAc                                                                                                                                                                                                                   <  1:546754/251‑1 (MQ=255)
                      aTTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAActc                                                                                                                                                                                                                 <  1:687334/249‑1 (MQ=255)
                         cTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATggggg                                                                                                                                                                                                                                <  1:882512/231‑4 (MQ=255)
                         cTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTat                                                                                                                                                                                                            <  1:868717/251‑2 (MQ=255)
                                 gTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGAt                                                                                                                                                                                                                      <  1:603979/233‑1 (MQ=255)
                                 gTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAAtt                                                                                                                                                                                                    >  1:561047/1‑251 (MQ=255)
                                  tATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAAt                                                                                                                                                                                                     <  1:775996/249‑1 (MQ=255)
                                  tATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATtg                                                                                                                                                                                                   >  1:383339/1‑251 (MQ=255)
                                       aTTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCt                                                                                                                                                                                                                          <  1:899676/223‑1 (MQ=255)
                                             tCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCtaga                                                                                                                                                                                                                       >  1:560229/1‑217 (MQ=255)
                                             tCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTaaa                                                                                                                                                                                        >  1:223851/1‑251 (MQ=255)
                                                  aTTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAAc                                                                                                                                                                                                                   <  1:230326/219‑1 (MQ=255)
                                                       gttactagATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTatgatg                                                                                                                                                                                                                                           <  1:797260/183‑1 (MQ=255)
                                                       gttactagATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAActc                                                                                                                                                                                                                 <  1:213634/209‑1 (MQ=255)
                                                          actagATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATtgatg                                                                                                                                                                                                >  1:484124/5‑230 (MQ=255)
                                                                     ttAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttc                                                                                                                                                                   <  1:26449‑M1/248‑17 (MQ=255)
                                                                        gTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAAt                                                                                                                                                                                                                                        >  1:315764/1‑176 (MQ=255)
                                                                        gTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      <  1:486337/226‑1 (MQ=255)
                                                                        gTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataa                                                                                                                                                             >  1:218607‑M1/1‑229 (MQ=255)
                                                                            aTCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATa                                                                                                                                                                                                                     <  1:533840/191‑1 (MQ=255)
                                                                            aTCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      <  1:605751/222‑1 (MQ=255)
                                                                            aTCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacaca                                                                                                                                                         >  1:649167‑M1/1‑225 (MQ=255)
                                                                             tCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgg                                                                                                                                                                                                                                   >  1:135131/1‑176 (MQ=255)
                                                                             tCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaa                                                                                                                                                        >  1:291681‑M1/1‑224 (MQ=255)
                                                                                aTGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGTTTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAActc                                                                                                                                                                                                                 >  1:669837/1‑191 (MQ=255)
                                                                                aTGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGAt                                                                                                                                                                                                                      <  1:75221/186‑1 (MQ=255)
                                                                                          gttttGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAActc                                                                                                                                                                                                                 >  1:144544/2‑181 (MQ=255)
                                                                                            tttgccagctcacttttTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatg                                                                                                                                         <  1:710751‑M1/243‑43 (MQ=255)
                                                                                                   gcTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAAt                                                                                                                                                                                                                                        >  1:10097/2‑149 (MQ=255)
                                                                                                   gcTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgg                                                                                                                                                                                                                                   <  1:432333/153‑1 (MQ=255)
                                                                                                      cACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCGTTTATGATGAATTATGGGGGGTAt                                                                                                                                                                                                                            >  1:686537/1‑158 (MQ=255)
                                                                                                        cTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      >  1:151066/1‑194 (MQ=255)
                                                                                                            ttACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      >  1:871753/1‑190 (MQ=255)
                                                                                                               cAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATgggggg                                                                                                                                                                                                                               <  1:891894/146‑1 (MQ=255)
                                                                                                               cAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATtgat                                                                                                                                                                                                 >  1:236837/1‑176 (MQ=255)
                                                                                                                 attattGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgatagg                                                                                                                    >  1:54768‑M1/1‑188 (MQ=255)
                                                                                                                 attattGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgatagg                                                                                                                    <  1:224522‑M1/251‑64 (MQ=255)
                                                                                                                    attGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggagg                                                                                                                 >  1:138048‑M1/1‑185 (MQ=255)
                                                                                                                     ttggcatgacactgacaattTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggc                                                                                                                <  1:37942‑M1/243‑68 (MQ=255)
                                                                                                                        gcatgacacTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      >  1:836005/6‑178 (MQ=255)
                                                                                                                            gacacTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGa                                                                                                                                                                                                         >  1:405555/2‑155 (MQ=255)
                                                                                                                             acacTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAActc                                                                                                                                                                                                                 >  1:75380/1‑146 (MQ=255)
                                                                                                                               acTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAACATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggcagagatgaac                                                                                                      <  1:90798‑M1/251‑78 (MQ=255)
                                                                                                                                  gACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAAc                                                                                                                                                                                      <  1:450193/168‑1 (MQ=255)
                                                                                                                                                               ccGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGAt                                                                                                                                                                                                                      >  1:150265/1‑107 (MQ=255)
                                                                                                                                                               ccGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTatc                                                                                                                                                                                                           >  1:569432/1‑116 (MQ=255)
                                                                                                                                                               ccGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggcagagatgaacgataacaaaaccattcagccgacggatgacaa                                                                      >  1:277751‑M1/1‑142 (MQ=255)
                                                                                                                                                               ccGTAATATCTGGCAAAATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggc                                                                                                                <  1:149953‑M1/209‑68 (MQ=255)
                                                                                                                                                                                         ccAGCAACAGCATTAATTTATGATTTTGTCACAAAAATGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATGGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggc                                                                                                                <  1:148022‑M1/183‑68 (MQ=255)
                                                                                                                                                                                                                          aaaaTGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggcagagatgaacgataacaaaaccattcagccgacggatgataaaacggaaaccgattatcaaccggaagtcagcaaaattgccaaacg                         >  1:351355‑M1/1‑83 (MQ=255)
                                                                                                                                                                                                                            aaTGATTATTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggcagagatgaacgataacaaaaccattcagccgacggatgacaaaacggaaaccgattatcaaccggaagtcagcaaaattgccaaacgcggtaaaaaccaaaat         >  1:523010‑M1/1‑81 (MQ=255)
                                                                                                                                                                                                                                   aTTGTGGCATTTATGATGAATTATGGGGGGTATCTAGATAACTCTTTATCGATAATTGATGATCTTAAAACTAGttaaaacgccggtttcttataacacaaccatttcgccaaatgtggcaagagacgaacgataggaggcagagatgaacgataacaaaaccattcagccgacggatgacaaaacggaaaccgattatcaaccggaagtcagcaaaattgccaaacgcggtaaaaaccaaaatctattta  >  1:826185‑M1/1‑74 (MQ=255)
                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     
CTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTATTGGATTCAGTTAGTCAATCTATGAGTAGCAATTTTGCTAACTCACTTTTTACAATTATTGGCGTAACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTGGCAAGATTGAAGCTCCAGCAACAGCATTAATTTATGATTTTGCCACAAAAATGATCATTGTAGCATTTATGATGAATTATGGAGGGTATCTGGATAACTCTTTAGCGATAATTGATGATCTCAAAACTAGCTTAACCGGCTTTACCGGAAACGGTATAGCCGGTTTAATGGATGACCAATTGGAATTAGGATCGGATATTGCTGGTCAACTCTTTGATCTAGATAAATCTAAATATGTCCCCTTAGAAGGTGGAATTGCTTCATTTCTTGCCTGGATTGGTGTAGCAGTATCTTTATTTGTGCCATT  >  1/1198979‑1199456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑