Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,198,923 C→T intergenic (+39343/+222014) unknown → / ← unknown tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,198,9230CT100.0% 222.1 / NA 84intergenic (+39343/+222014)unknown/unknowntRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/40);  total (44/40)

AATGAGCAACAAAAACAGTTAGCGTCTCAACGTCGCTCAAACGTTAAGGGCGTTATATTCAATTAATACGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTAACTTTAAGTGCTTGTTCAGAAGAAGTTAAAAGTGTGGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAGAATGTGAGAAAAAAGCCGAACCGCTGATGGCAAATTCTAATTGTCGAAACGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGTTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTATTGGATTCAGTTAGTCAATCTATGAGTAGCAATTTTGCTAACTCACTTTTTACAATTATTGGCGTAACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTG  >  1/1198680‑1199149
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  
aatgaGCAACAAAAACAGTTAGCGTCTCAACGTCGCTTAAACGTTAAGGGCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAAt                                                                                                                                                                                                                              <  1:319941/250‑1 (MQ=255)
                      cGTCTCAACGTCGCTTAAACGTTAAGGGCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGAc                                                                                                                                                                                                        <  1:800828/250‑1 (MQ=255)
                                       aaCGTTAAGGGCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGgtg                                                                                                                                                                                      <  1:512594/251‑1 (MQ=255)
                                         cGTTAAGGGCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGc                                                                                                                                                                                                                         >  1:737249/1‑214 (MQ=255)
                                         cGTTAAGGGCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGgtg                                                                                                                                                                                      >  1:505105/1‑249 (MQ=255)
                                                 gCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCAcaagca                                                                                                                                                                                                                  <  1:743181/213‑1 (MQ=255)
                                                 gCGTTATATTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAAttttt                                                                                                                                                                             >  1:229055/1‑250 (MQ=255)
                                                      atatTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAAtt                                                                                                                                                                       >  1:584480/1‑251 (MQ=255)
                                                      atatTCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTACTAAtt                                                                                                                                                                       >  1:47796/1‑251 (MQ=255)
                                                          tCAACTAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGt                                                                                                                                                                   <  1:326000/251‑1 (MQ=255)
                                                           caactAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGtt                                                                                                                                                                  >  1:524314/5‑251 (MQ=255)
                                                            aactAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTc                                                                                                                                                                                                           >  1:324995/4‑209 (MQ=255)
                                                              ctAATATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTAt                                                                                                                                                                >  1:384385/2‑250 (MQ=255)
                                                                aaTATGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCAt                                                                                                                                                             <  1:349590/251‑1 (MQ=255)
                                                                 atatggAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCAtt                                                                                                                                                            <  1:649048/247‑1 (MQ=255)
                                                                                tGAAAAAACTTTTTATCGCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTgag                                                                                                                                             <  1:288558/251‑1 (MQ=255)
                                                                                                 gCATTATTTATATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATgag                                                                                                                                                       >  1:225026/1‑224 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGaa                                                                                                                                                                                                 <  1:223406/177‑1 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCAt                                                                                                                                                             <  1:198681/213‑1 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCAt                                                                                                                                                             <  1:325351/213‑1 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATgag                                                                                                                                                       >  1:160224/1‑219 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATg                                                                                                                                                         <  1:304672/217‑1 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATg                                                                                                                                                         <  1:328825/217‑1 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTAtt                                                                                                                        >  1:802634/1‑250 (MQ=255)
                                                                                                      atttatATTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTAtt                                                                                                                        >  1:434107/1‑250 (MQ=255)
                                                                                                           tatTCACTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTa                                                                                                                  <  1:26331/251‑1 (MQ=255)
                                                                                                               caCTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAAt                                                                                                                                                                                                >  1:371754/2‑169 (MQ=255)
                                                                                                               caCTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATg                                                                                                                                                         <  1:134306/207‑1 (MQ=255)
                                                                                                                 cTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTactagat                                                                                                            >  1:489736/1‑245 (MQ=255)
                                                                                                                 cTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTactagat                                                                                                            >  1:832829/1‑245 (MQ=255)
                                                                                                                 cTTTAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTactagat                                                                                                            >  1:470046/1‑245 (MQ=255)
                                                                                                                   ttAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGAc                                                                                                                                                                                                        <  1:346764/157‑1 (MQ=255)
                                                                                                                   ttAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTactagatt                                                                                                           >  1:829647/1‑243 (MQ=255)
                                                                                                                   ttAAGTGCCTGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTc                                                                                                          <  1:468944/251‑1 (MQ=255)
                                                                                                                        tgcctGTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCAt                                                                                                                                                             >  1:569840/5‑195 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGATCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATTCTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTacta                                                                                                               <  1:91494/236‑4 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGaa                                                                                                                                                                                                 <  1:647249/154‑1 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAAtt                                                                                                                                                                                >  1:826253/1‑171 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGAt                                                                                                                                                     >  1:742845/1‑198 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCg                                                                                                                             >  1:132721/1‑222 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTc                                                                                                  >  1:592640/1‑249 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTc                                                                                                  <  1:522327/249‑1 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCaa                                                                                                >  1:755239/1‑251 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCaa                                                                                                >  1:510211/1‑251 (MQ=255)
                                                                                                                             gTTCAGAAGAGGTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCaa                                                                                                >  1:163358/1‑251 (MQ=255)
                                                                                                                                   aagaggTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCt                                                                                             <  1:616641/248‑1 (MQ=255)
                                                                                                                                       ggTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCg                                                                                                                                      <  1:731728/202‑1 (MQ=255)
                                                                                                                                       ggTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTa                                                                                      >  1:617465/2‑251 (MQ=255)
                                                                                                                                        gTTAAAAGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGt                                                                                       <  1:108910/249‑1 (MQ=255)
                                                                                                                                           aaaaGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCag                                                                                  <  1:148409/251‑2 (MQ=255)
                                                                                                                                           aaaaGCGTAGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCag                                                                                  <  1:429156/251‑2 (MQ=255)
                                                                                                                                            aaagcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAg                                                                                        >  1:514144/9‑244 (MQ=255)
                                                                                                                                              agcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTgag                                                                                                                                             >  1:717610/7‑189 (MQ=255)
                                                                                                                                               gcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTg                                                                                                                                               <  1:264438/181‑1 (MQ=255)
                                                                                                                                               gcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGagag                                                                                                                                           <  1:19210/185‑1 (MQ=255)
                                                                                                                                               gcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAg                                                                                        >  1:685145/6‑241 (MQ=255)
                                                                                                                                               gcgtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGtttt                                                                              >  1:898320/6‑251 (MQ=255)
                                                                                                                                                 gtagAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATa                                                                                                                                                                                                                             >  1:382891/4‑106 (MQ=255)
                                                                                                                                                   caggTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACg                                                                                                                                                                                                       >  1:712240/4‑126 (MQ=255)
                                                                                                                                                    gAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAg                                                                                        >  1:339064/1‑236 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCTAATAAAGCACAAGCAAGTATTCGACGTATGaa                                                                                                                                                                                                 <  1:95643/129‑1 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGtt                                                                                                                                                                  >  1:588218/1‑160 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATc                                                                                                                                                               <  1:796502/163‑1 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGagag                                                                                                                                           >  1:721465/1‑183 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGagag                                                                                                                                           <  1:169242/183‑1 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGagag                                                                                                                                           <  1:768664/183‑1 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTa                                                                                            >  1:564909/1‑230 (MQ=255)
                                                                                                                                                      gTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTAt                                                                                           <  1:94588/231‑1 (MQ=255)
                                                                                                                                                        aTTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTAt                                                                                                                                                                                                             >  1:875213/1‑115 (MQ=255)
                                                                                                                                                        aTTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGt                                                                                       >  1:31945/1‑233 (MQ=255)
                                                                                                                                                                gAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCg                                                                                                                                                                                           >  1:626447/1‑125 (MQ=255)
                                                                                                                                                                gAACATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGccagatattacggcaa                                                             >  1:593204/1‑236 (MQ=255)
                                                                                                                                                                  aCATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGagag                                                                                                                                           <  1:272002/171‑1 (MQ=255)
                                                                                                                                                                  aCATACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTc                                                                                                  >  1:212568/1‑212 (MQ=255)
                                                                                                                                                                    aTACGACTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATAc                                                                                                                                                                                              >  1:794157/1‑118 (MQ=255)
                                                                                                                                                                          cTGAACGTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGc                                                   <  1:191853/251‑1 (MQ=255)
                                                                                                                                                                                gTCAAAAAATGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAatta                                                        <  1:858491/240‑1 (MQ=255)
                                                                                                                                                                                      aaaTGTTAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACa                                       <  1:78536/251‑1 (MQ=255)
                                                                                                                                                                                            tAGAAAAATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTAc                                 <  1:136938/251‑1 (MQ=255)
                                                                                                                                                                                             agaaaaATGTGAGAAAAAAGCGGAGCCATTAATGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGt                                                                                                       >  1:657488/1‑180 (MQ=255)
                                                                                                                                                                                                        agaaaaaagcggagccattaaTGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGaaaa                     >  1:407200/21‑251 (MQ=255)
                                                                                                                                                                                                                        attaaTGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAatat     <  1:6411/247‑1 (MQ=255)
                                                                                                                                                                                                                         ttaaTGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATc    <  1:382966/248‑1 (MQ=255)
                                                                                                                                                                                                                           aaTGGCAAACTCCAATTGTAGTAATGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGCTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTACTAGATTCAGTTAGTCAATCTATGAGTAGCAGTTTTGCCAGCTCACTTTTTACAATTATTGGCATGACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTg  <  1:476506/250‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                  
AATGAGCAACAAAAACAGTTAGCGTCTCAACGTCGCTCAAACGTTAAGGGCGTTATATTCAATTAATACGGAGTAAAAGATGAAAAAACTTTTTATCGCATTATTTATATTAACTTTAAGTGCTTGTTCAGAAGAAGTTAAAAGTGTGGAGTATTACAAAGAACATACGACTGAACGTCAAAAAATGTTAGAAGAATGTGAGAAAAAAGCCGAACCGCTGATGGCAAATTCTAATTGTCGAAACGCAAATAAAGCACAAGCAAGTATTCGACGTATGAATACTCGAGGTGTTAATTTTTCTAATTAGGTTATCATTATGAGATTCTTTGAGAGTATCGATTCTTTCGTTATTCAGTTATTGGATTCAGTTAGTCAATCTATGAGTAGCAATTTTGCTAACTCACTTTTTACAATTATTGGCGTAACACTGACAATTTACTTTTTAGGAAAAGGATTTGCCGTAATATCTG  >  1/1198680‑1199149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑