Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,175,808	T→C	intergenic (+16228/+245129)	unknown → / ← unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,175,808	0	T	C	100.0%	182.1 / NA	67	intergenic (+16228/+245129)	unknown/unknown	tRNA‑Val‑GAC/tRNA‑Met‑CAT
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/29);  total (38/29)

TTATATATATTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGATGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACGTAAAGGCAA  >  1/1175583‑1176041                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                          ttATATATATTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACAtt                                                                                                                                                                                                                  >  1:661987/1‑251 (MQ=255)   atatatatTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTgg                                                                                                                                                                                                                >  1:869924/1‑251 (MQ=255)   atatatatTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGATATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCg                                                                                                                                                                                                                              >  1:741743/1‑237 (MQ=255)       atatTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGCGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGAtt                                                                                                                                                                                                            >  1:55694/1‑251 (MQ=255)        tatTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGc                                                                                                                                                                                                                                >  1:329478/1‑230 (MQ=255)         atTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTa                                                                                                                                                                                                           >  1:333416/1‑250 (MQ=255)               atatTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACAt                                                                                                                                                                                                                   <  1:397246/236‑1 (MQ=255)                tatTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAg                                                                                                                                                                                                   >  1:402712/1‑251 (MQ=255)                tatTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAg                                                                                                                                                                                                   <  1:20577/251‑1 (MQ=255)                          gTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCAt                                                                                                                                                                                                                                   >  1:402762/1‑209 (MQ=255)                          gTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGc                                                                                                                                                                                                                                <  1:290352/212‑1 (MQ=255)                          gTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCg                                                                                                                                                                                                                              >  1:531921/1‑214 (MQ=255)                          gTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTg                                                                                                                                                                                                 >  1:84212/1‑243 (MQ=255)                          gTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCaaa                                                                                                                                                                                         >  1:821486/1‑251 (MQ=255)                             tAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAAt                                                                                                                                                                                      <  1:277565/251‑1 (MQ=255)                                     gTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACa                                                                                                                                                                                                                    >  1:321783/1‑213 (MQ=255)                                           gCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACa                                                                                                                                                                                                                    >  1:721403/1‑207 (MQ=255)                                            ccAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTAcc                                                                                                                                                                       <  1:819567/251‑1 (MQ=255)                                              aaTGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGa                                                                                                                                                                     <  1:72168/251‑1 (MQ=255)                                                      tttttGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGAt                                                                                                                                                                                                             <  1:653869/203‑1 (MQ=255)                                                      tttttGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAAC‑TTGGGATTACATCGAAGTGCGGTCAAAAATCAAAGAGAATTTACCGATGCTCATTg                                                                                                                                                            >  1:103152/1‑251 (MQ=255)                                                           gtgCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGc                                                                                                                                                         <  1:70682/250‑1 (MQ=255)                                                                    gCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACg                                                                                                                                               >  1:149778/1‑251 (MQ=255)                                                                    gCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACg                                                                                                                                               >  1:353286/1‑251 (MQ=255)                                                                     cTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACga                                                                                                                                              <  1:676359/251‑2 (MQ=255)                                                                     cTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACg                                                                                                                                               <  1:816227/250‑1 (MQ=255)                                                                     cTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGc                                                                                                                                              <  1:231046/251‑1 (MQ=255)                                                                                 ccATTTTTCTAAGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAg                                                                                                                                                                                                   >  1:412048/1‑186 (MQ=255)                                                                                   aTTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAg                                                                                                                                                                                                   <  1:410257/184‑1 (MQ=255)                                                                                       ttCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGc                                                                                                                                                         >  1:531945/1‑222 (MQ=255)                                                                                             gggTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACAt                                                                                                                                                                                                        <  1:54966/169‑1 (MQ=255)                                                                                             gggTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGa                                                                                                                                    <  1:440317/237‑1 (MQ=255)                                                                                               gTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACa                                                                                                                    >  1:401252/1‑251 (MQ=255)                                                                                               gTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACa                                                                                                                    >  1:222038/1‑251 (MQ=255)                                                                                                                   gAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAg                                                                                                                                                                                                   <  1:632612/152‑1 (MQ=255)                                                                                                                   gAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTa                                                                                                >  1:146122/1‑251 (MQ=255)                                                                                                                     aaTTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTagc                                                                                              <  1:2084/251‑1 (MQ=255)                                                                                                                       tttATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTagcag                                                                                            <  1:886234/251‑1 (MQ=255)                                                                                                                            cGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCgggg                                                                                                                                     >  1:860044/1‑205 (MQ=255)                                                                                                                               cAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATg                                                                                    <  1:302184/251‑1 (MQ=255)                                                                                                                                 aaTTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGat                                                                                  <  1:643776/251‑1 (MQ=255)                                                                                                                                                    gATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTagc                                                                                              <  1:296652/220‑1 (MQ=255)                                                                                                                                                    gATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAAcc                                                                   >  1:855084/1‑247 (MQ=255)                                                                                                                                                     aTTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTc                                                              <  1:405621/251‑1 (MQ=255)                                                                                                                                                          aaGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAAt                                                                                                                                                                                      <  1:360146/126‑1 (MQ=255)                                                                                                                                                          aaGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGatat                                                                                <  1:170558/228‑1 (MQ=255)                                                                                                                                                          aaGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTg                                                            >  1:885136/1‑248 (MQ=255)                                                                                                                                                             cGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGAtgt                                                        <  1:20559/249‑1 (MQ=255)                                                                                                                                                               aaTCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGc                                                     <  1:185964/250‑1 (MQ=255)                                                                                                                                                                    gTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACAt                                                                                                                                                                                                        >  1:355216/1‑98 (MQ=255)                                                                                                                                                                    gTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGc                                                                                                                                                         <  1:777941/145‑1 (MQ=255)                                                                                                                                                                       cGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGAtgt                                                        >  1:796094/1‑239 (MQ=255)                                                                                                                                                                         gAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTgg                                          >  1:324482/1‑251 (MQ=255)                                                                                                                                                                              ggTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGaaaa                                      >  1:560046/1‑250 (MQ=255)                                                                                                                                                                                              gACCGGCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGaaaa                                      >  1:217325/1‑234 (MQ=255)                                                                                                                                                                                                   gCAATATTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATCACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTg                >  1:739063/1‑251 (MQ=255)                                                                                                                                                                                                        atTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAAc            >  1:718307/1‑250 (MQ=255)                                                                                                                                                                                                        atTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACg           <  1:841354/251‑1 (MQ=255)                                                                                                                                                                                                        atTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACg           >  1:579090/1‑251 (MQ=255)                                                                                                                                                                                                        atTCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACg           >  1:620491/1‑251 (MQ=255)                                                                                                                                                                                                         ttCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGc                                                                                                                                              >  1:222717/1‑119 (MQ=255)                                                                                                                                                                                                         ttCGTAACGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGt                               <  1:392443/230‑1 (MQ=255)                                                                                                                                                                                                                cGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGc                                                                                                                                                         >  1:580027/1‑101 (MQ=255)                                                                                                                                                                                                                cGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTagc                                                                                              <  1:45361/160‑1 (MQ=255)                                                                                                                                                                                                                cGTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACGTAAAGGCa   >  1:484326/1‑251 (MQ=255)                                                                                                                                                                                                                 gTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACGTAAAGGCaa  >  1:379092/1‑251 (MQ=255)                                                                                                                                                                                                                 gTATTGGCAAAGCACGACGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACGTAAAGGCaa  >  1:381426/1‑251 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                          TTATATATATTTTTATATTAAGAGGGTTTAAAAGGAGTTTGAGCCAATGGTAATTTTTGTGCTATCTGCTAAAATACGCCCCATTTTTCTATGGGTTAAAAAGTGAATTAACATGAAATTTATCGTCAAATTATTTCCTGAAATTATGATTAAAAGCGAATCCGTGCGGAAACGGTTCGTGAAAATTCTGACCGGCAATATTCGTAACGTATTGGCAAAGCACGATGACACCATCGCCGTGGTGAAACATTGGGATTACATCGAAGTGCGGTCAAAAATCGAAGAGAATTTACCGATGCTCATTGAGCAGTTGCAACGCATCCCGGGGATTCATCATTTTCTACAAGTGGAAGAAAAACCCTTTAGCAGCCTCCATGATATTTTTGAACAAACCCTGTCTGATGTGGCTCCGCAACTGGAAAACAAGAGTTTTTGCGTGCGGGTGAAACGTAAAGGCAA  >  1/1175583‑1176041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑