| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,150,974 | A→C | intergenic (+13925/‑8530) | unknown → / → unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/tRNA‑Val‑GAC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,150,974 | 0 | A | C | 100.0% | 108.9 / NA | 41 | intergenic (+13925/‑8530) | unknown/unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/tRNA‑Val‑GAC |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (18/23); total (18/23) | |||||||||||
TTATTTTTATTTGAAGTTAACACAAAAAATGAAGAATTAGAAAGAAGAAATCAAATTTTATTAAATGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTAAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATGTATTAGGTGATGAA > 1/1150738‑1151214 | ttatttttatttGAAGTTAACACAAAAAATGAAGAATTAGAAAGAAGAAATCAAATTTTATTAAATGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGt < 1:778263/251‑1 (MQ=255) ttAGAAAGAAGAAATCAAATTTTATTAAATGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAaat > 1:485612/1‑207 (MQ=255) ttattaAATGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTAttt > 1:111859/1‑215 (MQ=255) aaaTGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCtggtgg < 1:371518/251‑1 (MQ=255) aaTGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAatga > 1:161691/1‑185 (MQ=255) tAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGAc < 1:72695/251‑1 (MQ=255) aTTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGt > 1:256697/1‑170 (MQ=255) aGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCaa > 1:374778/1‑251 (MQ=255) ggAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAatga < 1:524935/156‑1 (MQ=255) tATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGaaa > 1:23530/1‑217 (MQ=255) tATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATa > 1:511550/1‑251 (MQ=255) cacaACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATa < 1:413371/243‑1 (MQ=255) cacaACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAg < 1:62720/251‑1 (MQ=255) cacaACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAg < 1:558678/251‑1 (MQ=255) caacaaGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGaaa < 1:537926/207‑1 (MQ=255) acaaGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGAc < 1:288265/209‑1 (MQ=255) cGGCAAAATTAGCGGTAGTAAGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCTCAAATACATTACAGAAAATTAATTTATTGAtgtg < 1:819164/250‑1 (MQ=255) cGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAaat < 1:871415/223‑1 (MQ=255) gtagtaGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTg > 1:103545/1‑251 (MQ=255) tagtagGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGAc > 1:119721/1‑177 (MQ=255) gtagGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGa > 1:466673/1‑251 (MQ=255) tCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACa > 1:96752/1‑251 (MQ=255) cTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGagaaaatagaaa < 1:6975/120‑1 (MQ=255) cTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGagaaaataga > 1:15094/1‑118 (MQ=255) cTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGAc < 1:290728/156‑1 (MQ=255) cTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTataaataa < 1:462403/223‑1 (MQ=255) cTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTataaataa > 1:203486/1‑223 (MQ=255) aCCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTataaataa > 1:690520/1‑201 (MQ=255) aCCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAatat > 1:421308/1‑235 (MQ=255) ccGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGtat < 1:809263/194‑1 (MQ=255) gCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGcc < 1:23493/219‑1 (MQ=255) gCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTAtct > 1:215477/1‑250 (MQ=255) aaaTGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTAc < 1:204262/164‑1 (MQ=255) cAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTataaat < 1:625436/188‑1 (MQ=255) aatgaatgCGTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAg < 1:302348/251‑1 (MQ=255) gTATATTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACa > 1:486084/1‑207 (MQ=255) tataTTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAgaga > 1:472428/1‑67 (MQ=255) tatTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATg < 1:399066/251‑1 (MQ=255) atTTTCAGTACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATGt < 1:120674/251‑1 (MQ=255) tACAAAAAGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATGTATTAGGt < 1:837058/250‑1 (MQ=255) aaaGAGCGGTCAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATGTATTAGGTGATGaa < 1:493847/251‑1 (MQ=255) | TTATTTTTATTTGAAGTTAACACAAAAAATGAAGAATTAGAAAGAAGAAATCAAATTTTATTAAATGAAATTAGTGAACGTATTGCAATCCAGGAAAAACTTATCAATACACAACAAGAACTAATTCAAGCGGCAAAATTAGCGGTAGTAGGACAAACTTTGACATCTATTAGCCATGAAATCACACAACCGCTAAATGCAATGAATGCGTATATTTTCAGTACAAAAAGAGCGGTAAAAAATAATGATGTTTTTTCTGCGAATAACTATTTAGAGAAAATAGAAAATTTAGTGGAGCGTACGGCGCTGGTGGTGAAAAGACTGCGCCATTTTTCCCGCCAAACCACAAATACATTACAGAAAATTAATTTATTGATGTGTATAAATAATGCGTGGGATTTACTTGAGCCAAAACATAAATATCTGAATGCTCGGTTATCTCTTCCTACAGATTTACCTGATGTATTAGGTGATGAA > 1/1150738‑1151214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |