| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,138,024 | C→T | intergenic (+975/‑21480) | unknown → / → unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/tRNA‑Val‑GAC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,138,024 | 0 | C | T | 98.6% | 190.7 / NA | 72 | intergenic (+975/‑21480) | unknown/unknown | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/tRNA‑Val‑GAC |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (41/30); total (42/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCAATTGGGAAGTGACATGATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAACAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTACACCACCGGTGACTAA > 1/1137777‑1138270 | ggCAATTGGGAAGTGACATGATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATaaa > 1:315696/1‑251 (MQ=255) gCAATTGGGAAGTGACATGATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAag > 1:126908/1‑251 (MQ=255) gACATGATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTa > 1:654101/1‑251 (MQ=255) ccATGATCCTTGTGGTCGCTTTTTGCCCGGGTGAAAGACAGAATAGTAGTGCCCGACCCTGGTGAACAGTGGCCCCCACATACGGCGCCGGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAag < 1:462830/236‑1 (MQ=255) gATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGaaa > 1:729797/1‑250 (MQ=255) gATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGaa > 1:550837/1‑250 (MQ=255) aTCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACg > 1:505631/1‑251 (MQ=255) aTCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAACAAAGAGCAGTGCCGGTAAGAACg > 1:899575/1‑251 (MQ=255) gTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTa > 1:300460/1‑251 (MQ=255) cATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAgg > 1:178072/1‑250 (MQ=255) ggTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCa > 1:829589/1‑251 (MQ=255) gAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAg > 1:678363/1‑212 (MQ=255) gAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTaaa > 1:884753/1‑251 (MQ=255) gAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTaaa > 1:712888/1‑251 (MQ=255) gAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGGGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTaaa > 1:748732/1‑251 (MQ=255) ggtaaacggggttccccccaTACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTatat < 1:314271/232‑1 (MQ=255) ggggAACAGTGGCCCCCACATCCGGCCCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTatat < 1:403306/247‑1 (MQ=255) ggTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAg > 1:69349/1‑192 (MQ=255) ggTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGGGCCGGTTTTTatat > 1:181430/1‑250 (MQ=255) gAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGGAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCg > 1:834016/1‑249 (MQ=255) aCAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGa > 1:870894/1‑251 (MQ=255) cccacATGCGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTat < 1:829650/250‑1 (MQ=255) cccacAAACGGCCCCGGCCAGGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTat < 1:761207/250‑1 (MQ=255) accacATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTat > 1:393588/1‑251 (MQ=255) ccacATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTatt > 1:852669/1‑251 (MQ=255) ccacATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTatt > 1:542784/1‑251 (MQ=255) cacaTACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATa > 1:55094/1‑217 (MQ=255) catccGGCCCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTattgat < 1:228118/247‑1 (MQ=255) caTACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGGTTTTATATCGCTGACCACGTTattgat > 1:60777/1‑251 (MQ=255) aagcgggcgcgggcaaggACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTattgat < 1:663493/234‑1 (MQ=255) gcgcCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTcc < 1:39394/250‑1 (MQ=255) ccgccgATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGa > 1:476766/1‑251 (MQ=255) tAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTaaaa < 1:431987/251‑1 (MQ=255) tGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGgcgc < 1:670480/251‑1 (MQ=255) cATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAagg > 1:582435/1‑167 (MQ=255) ccACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAagag > 1:103802/1‑115 (MQ=255) gAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAagg > 1:444018/1‑154 (MQ=255) aCCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTattgat < 1:178648/198‑1 (MQ=255) aCCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCAt > 1:223526/1‑237 (MQ=255) aCCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCa > 1:150894/1‑251 (MQ=255) ccATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAg > 1:661607/1‑251 (MQ=255) cATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGt > 1:503772/1‑251 (MQ=255) cgcgTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAgg < 1:541528/251‑1 (MQ=255) cgcgTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAgg < 1:103105/251‑1 (MQ=255) cgTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGa < 1:643721/133‑1 (MQ=255) gggAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGAt < 1:210526/131‑1 (MQ=255) aaGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGAc < 1:386913/250‑1 (MQ=255) aTGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTc < 1:856198/251‑1 (MQ=255) ccGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGTCCAGTACCCAGGCTTTGACATATTCATg < 1:607772/250‑1 (MQ=255) gcgATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGc < 1:823537/250‑1 (MQ=255) gggCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTACAGGCAAAAAAc > 1:673772/1‑178 (MQ=255) cagcaTAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTGCCCAGGCTTTGACATATTCATGCAGGCTTACCAGa < 1:306257/250‑1 (MQ=255) gcaTAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCtt > 1:793772/1‑242 (MQ=255) gcaTAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGGGCCGGTTTTTATATCGCTGACCACGGTATTGATTGGCCAggga > 1:707269/1‑165 (MQ=255) aaGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAAt < 1:383501/251‑1 (MQ=255) gTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTAcc < 1:118004/231‑1 (MQ=255) gTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACa > 1:124371/1‑251 (MQ=255) ccccAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTattgat < 1:892453/140‑1 (MQ=255) cccAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATg < 1:297210/251‑1 (MQ=255) cAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCa > 1:389237/1‑213 (MQ=255) aaCTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGc > 1:740081/1‑173 (MQ=255) gTGCCGGTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTAcc > 1:538252/1‑219 (MQ=255) gTGGAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAgg < 1:270419/187‑1 (MQ=255) ggAAAATGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGGAGGATACCAAGGAGGCTAAATAAGAGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCg > 1:3635/1‑251 (MQ=255) aaaaTGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGc < 1:10824/250‑1 (MQ=255) aTGCCATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTc > 1:498013/1‑193 (MQ=255) cATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTacac < 1:691338/251‑1 (MQ=255) cATAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTacac < 1:562093/251‑1 (MQ=255) aTAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTAcacc < 1:470403/251‑1 (MQ=255) tAATGGCGGCTAAAATAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTAcacca < 1:91622/251‑1 (MQ=255) aaaaTAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATg > 1:874846/1‑213 (MQ=255) aaaaTAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTACACCACCGGTGACTaa > 1:599841/1‑251 (MQ=255) | GGCAATTGGGAAGTGACATGATCCATGTGGTCGCATTTTGCACCGGTGGAAGACAGAATAGTAGTGTCCGACACTGGTGAACAGTGGTCACCACATACGGCGCCTGCCATGACCGCCGATAAGCATGGTAACATAAATTCCACGGAACCATGCATCGCGTGGGAAGCGATGGCCGCGGCGATGGGCAGCATAATTCCGAAGGTTCCCCAACTGGTGCCGGTGGAAAATGCCATAATGGCGGCTAAAACAAAGAGCAGTGCCGGTAAGAACGCAAGCGGTAAGGCGTAGGATACCAAGGAGGCTAAATAAGTGCCGGTTTTTATATCGCTGACCACGTTATTGATTGTCCAGGCAAAAAACAGAATTAAAATGGCGCCAAGCATGGATTTCACGCCCAGTACCCAGGCTTTGACATATTCATGCAGGCTTACCAGACGATCGGATAAAATACAAATGGACGCAATAATCACCGCACTTACACCACCGGTGACTAA > 1/1137777‑1138270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |