Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,121,122	T→C	intergenic (‑61569/‑10981)	unknown ← / → unknown	tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,121,122	0	T	C	100.0%	211.8 / NA	73	intergenic (‑61569/‑10981)	unknown/unknown	tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/36);  total (37/36)

CCCCACGATTAATACATCCGCCTCTTGTCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATTCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTGGGCGTTTTCGTCTTTTAAACTTAAATACCAATGC  >  1/1120884‑1121361                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                ccccACGATTAATACATCCGCCTCTTGTCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTa                                                                                                                                                                                                                                     >  1:296098/1‑251 (MQ=255)        aTTAATACATCCGCCTCTTGTCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAg                                                                                                                                                                                                                              >  1:785393/1‑251 (MQ=255)             tACATCCGCCTCTTGTCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCa                                                                                                                                                                                                                         >  1:230694/1‑251 (MQ=255)                            tCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATtgc                                                                                                                                                                                                           <  1:544183/250‑1 (MQ=255)                                  gTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATc                                                                                                                                                                                                     <  1:170043/250‑1 (MQ=255)                                                       tgCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAgg                                                                                                                                                                                <  1:449709/250‑1 (MQ=255)                                                           aTTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCAt                                                                                                                                                                           >  1:834229/1‑251 (MQ=255)                                                                        cATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGcc                                                                                                                                                                                       <  1:890373/226‑1 (MQ=255)                                                                         aTCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTTACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGAt                                                                                                                                                                  <  1:50734/246‑1 (MQ=255)                                                                          tCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAg                                                                                                                                                            >  1:136367/1‑251 (MQ=255)                                                                               aCCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGAt                                                                                                                                                       >  1:831084/1‑251 (MQ=255)                                                                                  ttGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAAt                                                                                                                                                    <  1:661832/251‑1 (MQ=255)                                                                                   tGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATc                                                                                                                                                   <  1:816983/251‑1 (MQ=255)                                                                                     cACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCTCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCAc                                                                                                                                                 <  1:616077/251‑1 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAAccc                                                                                                                                                                                             <  1:769768/203‑1 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:307281/1‑251 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:593317/1‑251 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:607868/1‑251 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:362143/1‑251 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:733935/1‑251 (MQ=255)                                                                                         gCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcg                                                                                                                                             >  1:78800/1‑251 (MQ=255)                                                                                          cTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTGAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACcgcgc                                                                                                                                            <  1:451072/251‑1 (MQ=255)                                                                                               ggATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATAc                                                                                                                                                                         <  1:132384/217‑1 (MQ=255)                                                                                                   aaataaTGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATAc                                                                                                                                   <  1:306896/251‑1 (MQ=255)                                                                                                    aataatGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACa                                                                                                                                  <  1:660023/251‑1 (MQ=255)                                                                                                        atGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACt                                                                                                                              <  1:378016/251‑1 (MQ=255)                                                                                                        atGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACt                                                                                                                              <  1:126643/251‑1 (MQ=255)                                                                                                            cTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACa                                                                                                                                  >  1:803382/1‑243 (MQ=255)                                                                                                                   aCTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAgcac                                                                                                                   <  1:402083/251‑1 (MQ=255)                                                                                                                        gATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAgcacgcac                                                                                                               >  1:8968/1‑250 (MQ=255)                                                                                                                        gATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAgcacgcac                                                                                                               >  1:602587/1‑250 (MQ=255)                                                                                                                             cgacgTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAc                                                                                                         <  1:202318/251‑1 (MQ=255)                                                                                                                               acgTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAcc                                                                                                        <  1:858525/250‑1 (MQ=255)                                                                                                                               acgTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAcc                                                                                                        <  1:844981/250‑1 (MQ=255)                                                                                                                               acgTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAc                                                                                                         >  1:850751/1‑249 (MQ=255)                                                                                                                                cgTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTg                                                                                                      <  1:486284/251‑1 (MQ=255)                                                                                                                                 gTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTg                                                                                                                                                                              >  1:793359/1‑178 (MQ=255)                                                                                                                                 gTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTg                                                                                                      >  1:730368/1‑250 (MQ=255)                                                                                                                                    gTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGCTTTTGAGCGAACAATCCTTCTGCGGCTAATTTGAGt                                                                                                                                                                                                                             >  1:708123/1‑128 (MQ=255)                                                                                                                                    gTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATg                                                                                                  >  1:21226/1‑251 (MQ=255)                                                                                                                                    gTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATg                                                                                                  >  1:729276/1‑251 (MQ=255)                                                                                                                                                  atatCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAcc                                                                                                        <  1:470510/231‑1 (MQ=255)                                                                                                                                                    atCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGaa                                                                                  >  1:527878/1‑251 (MQ=255)                                                                                                                                                    atCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGaa                                                                                  >  1:720239/1‑251 (MQ=255)                                                                                                                                                            aTGCCGCCCCGGTTTTAGAGGT‑ATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCAcg                                                                          >  1:663048/1‑250 (MQ=255)                                                                                                                                                                 gccCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAgac                                                                                         >  1:592661/1‑231 (MQ=255)                                                                                                                                                                     cGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGAttt                                                                 >  1:266192/1‑251 (MQ=255)                                                                                                                                                                       gTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACt                                                                                                                        <  1:841483/194‑1 (MQ=255)                                                                                                                                                                       gTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGAttttt                                                               >  1:872905/1‑251 (MQ=255)                                                                                                                                                                              agGTAATAATGCCTACCGCTTGACTAAAGTGCGGTGGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGacac                                                                                                                         >  1:221438/1‑186 (MQ=255)                                                                                                                                                                                gTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATAc                                                                                                                                                                         >  1:104123/1‑136 (MQ=255)                                                                                                                                                                                gTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGaa                                                      >  1:22071/1‑251 (MQ=255)                                                                                                                                                                                 taataaTGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCt                                                                                                       >  1:633873/1‑201 (MQ=255)                                                                                                                                                                                 taataaTGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGaa                                                      >  1:108381/1‑250 (MQ=255)                                                                                                                                                                                 taataaTGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAAc                                                     <  1:102765/251‑1 (MQ=255)                                                                                                                                                                                 taataaTGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGATGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGaa                                                      >  1:569574/1‑250 (MQ=255)                                                                                                                                                                                   ataatGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACAt                                                   <  1:200736/251‑1 (MQ=255)                                                                                                                                                                                    taatGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAgcacgcac                                                                                                               <  1:729521/190‑1 (MQ=255)                                                                                                                                                                                     aatGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACCAACTGACACTAGCACGCACCAATAcc                                                                                                        >  1:443250/1‑196 (MQ=255)                                                                                                                                                                                     aatGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACt                                                                                                                        >  1:155394/1‑180 (MQ=255)                                                                                                                                                                                     aatGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATgg                                                 >  1:374987/1‑251 (MQ=255)                                                                                                                                                                                        gCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATAcc                                                                                                        <  1:563050/193‑1 (MQ=255)                                                                                                                                                                                         ccTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGgcgc                                              <  1:651649/250‑1 (MQ=255)                                                                                                                                                                                         ccTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGgcgc                                              <  1:628276/250‑1 (MQ=255)                                                                                                                                                                                             ccGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAAccc                                                                                                                                                                                             <  1:454269/103‑1 (MQ=255)                                                                                                                                                                                                  tGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTg                                    <  1:92395/251‑1 (MQ=255)                                                                                                                                                                                                    aCTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAA‑GTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTggg                                  <  1:874450/250‑1 (MQ=255)                                                                                                                                                                                                                 aGGTTTTTCTTGTGATTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGc                                                                                                                                         >  1:9727/1‑135 (MQ=255)                                                                                                                                                                                                                               aTTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTGGGCGTTTTCGTCTTTTAAACTTAAATAc        <  1:538617/250‑1 (MQ=255)                                                                                                                                                                                                                               aTTTTGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCAGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTGGGCGTTTTCGTCTTTTAAACTTAAATAc        <  1:252618/250‑1 (MQ=255)                                                                                                                                                                                                                                   tGAGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGgcgc                                              <  1:19530/208‑1 (MQ=255)                                                                                                                                                                                                                                     aGCGAACAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTGGGCGTTTTCGTCTTTTAAACTTAAATACCAATGc  <  1:346542/250‑1 (MQ=255)                                                                                                                                                                                                                                           cAATCCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACgcgc                                                                       <  1:239777/175‑1 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                CCCCACGATTAATACATCCGCCTCTTGTCGCCGGTTGGCGATTTCAATCATTTGTGCGATTTCAGCCGCCGCATCTTTACCTTGCACGGCTGTGGGATAAATAATGACTTTCAGACTCGGATCACGACGTTGTAGAATATGCAAAATATCCTGCAATGCCGCCCCGGTTTTAGAGGTAATAATGCCTACCGCTTGACTAAAGTGCGGTAGGTTTTTCTTGTGATTTTGAGCGAACAATTCTTCTGCCGCTAATTTGAGTTTCAGCGCTTCAAATTGCTGCATCAGTAACCCTTCGCCGGCAAGGTGCATACTTTCGATAATCAGTTGATAATCACCGCGCGGCTCATACAAACTGACACTAGCACGCACCAATACCTGCATGCCATTAGACGGACGAAAACCCACGCGCAGATTTTTCATGCGGAACATGGCGCAGCGCACTTGGGCGTTTTCGTCTTTTAAACTTAAATACCAATGC  >  1/1120884‑1121361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑