| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,102,421 | A→G | intergenic (‑42868/‑29682) | unknown ← / → unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,102,421 | 0 | A | G | 100.0% | 192.7 / NA | 68 | intergenic (‑42868/‑29682) | unknown/unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/28); total (40/28) | |||||||||||
TATTAATGGAAGAAATGGGTTTGGTCATCGAAGCGCACCACCATGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAAACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGTGACTAGCCCTAAAGCCATTCGTATTGAAG > 1/1102182‑1102664 | tattaATGGAAGAAATGGGTTTGGTCATCGAAGCGCACCACCATGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAat > 1:274056/1‑251 (MQ=255) tCGAAGCGCACCACCATGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGt > 1:499979/1‑251 (MQ=255) ccaccaTGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGaaa > 1:591673/1‑251 (MQ=255) caccaTGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAAc < 1:167521/251‑1 (MQ=255) accaTGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAat < 1:373080/231‑1 (MQ=255) cAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTAc < 1:301900/251‑1 (MQ=255) aCTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACAt < 1:164940/251‑1 (MQ=255) cTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAat > 1:522885/1‑216 (MQ=255) aaTTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAac < 1:898289/251‑1 (MQ=255) aCCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAat > 1:499958/1‑193 (MQ=255) aCCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCaa > 1:725533/1‑251 (MQ=255) aaaTTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGc < 1:472554/251‑1 (MQ=255) aTTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACAt < 1:193344/222‑1 (MQ=255) gCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAAAACCCCAAAACCTTAAACGc > 1:855427/1‑250 (MQ=255) ccTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAAc < 1:817262/247‑1 (MQ=255) cTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAat > 1:291596/1‑155 (MQ=255) cTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAat > 1:674029/1‑174 (MQ=255) cTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAac > 1:321972/1‑225 (MQ=255) aCGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTAc < 1:719959/250‑1 (MQ=255) aCCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCCAAGCCTTAAAAGCCTTTACCAACCCCAGTACCAAct > 1:654663/1‑250 (MQ=255) aCCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAAAACGCCCAAACCTTTAACGCCCTTTCCAACCCAAGTACCAAct > 1:87633/1‑250 (MQ=255) tataAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCg < 1:288959/251‑1 (MQ=255) tataAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAACCTTAAACGCCTTTTCCAACCCAAGTACCAACTCTTATAAGCg > 1:587838/1‑251 (MQ=255) aaTATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTAc > 1:426413/1‑176 (MQ=255) atatatCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAAc < 1:578290/211‑1 (MQ=255) tgccattaataATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTAc < 1:531978/242‑1 (MQ=255) tatCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTAc < 1:622782/251‑1 (MQ=255) atCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTCCATCGGCGGTATTATTAAAAACCCCAAAACCTTAAATGCCTTTACCCACCCAAGTACCAAATCTTATAAACGTTTgggac > 1:449548/1‑247 (MQ=255) gtacgtaATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAat > 1:207949/1‑136 (MQ=255) gtacgtaATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTAttatta < 1:859687/184‑1 (MQ=255) tacgtaATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGc > 1:85352/1‑139 (MQ=255) cgtaATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAAAGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTTGTACCGGGCtt > 1:393018/1‑251 (MQ=255) gtaATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAatat < 1:800802/134‑1 (MQ=255) taATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACAt > 1:268885/1‑165 (MQ=255) taATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCAGTATTATTAAACACCCCAAAACCCTAAACGCCTTTACCAAccccaatac > 1:436814/1‑213 (MQ=255) aaTGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAac < 1:555260/181‑1 (MQ=255) aaTGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGa < 1:140430/251‑1 (MQ=255) aTGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGGACCGGGCTTTGaa > 1:108189/1‑251 (MQ=255) gtgGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAACCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAg > 1:546364/1‑250 (MQ=255) ggCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACAt > 1:595157/1‑159 (MQ=255) cATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAAAACGCCAAAGCCTTAAAAGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCCCCg > 1:361738/1‑251 (MQ=255) atatGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAac > 1:892108/1‑173 (MQ=255) cGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAacac < 1:202774/166‑1 (MQ=255) cGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTgg > 1:72924/1‑251 (MQ=255) ggCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCCAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCgtcaaacatttt > 1:197190/1‑240 (MQ=255) gCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAg > 1:744962/1‑193 (MQ=255) aaaCCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGc < 1:158144/251‑1 (MQ=255) gATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTAc < 1:85345/171‑1 (MQ=255) gATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAAAGCCTTTACCAACCCAAGTACCAACTCTTATAAGAGGTTGGGACCGGGCTTTTAAGCACCGGGAttgttg > 1:523488/1‑220 (MQ=255) ggTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAACCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTAt > 1:578250/1‑251 (MQ=255) tGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAAccc < 1:410628/156‑1 (MQ=255) tGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCCACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAAACGTTCCGCTTCCATTCGTAttt > 1:3879/1‑250 (MQ=255) cGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAg < 1:165548/219‑1 (MQ=255) gTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCCAAACCTTAAACGCCTTTACCAACCCAAGTACCAAATCTTATAAACGGTTGGTACCGGGCTTTGAAGCACCGGGATTGTTGGCCTATTCCGCTAGTAAACGTTCCGCTTCCATTCGTATTCcggcgggg > 1:811394/1‑249 (MQ=255) gTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCCTTACCAACCCAAGTACCAACTCTTATAAGCGTTTTGTACCGGGCTTTGAAGCACCGGTATTTTTGGCCTATTCCGCCAGTAACCCCTCCGCTTCCATTCGTATTCcggcgggg > 1:898549/1‑249 (MQ=255) ggTATGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGcc > 1:604199/1‑123 (MQ=255) aTGCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAAAACGCCCAAACCTTAAAAGCCTTTACCAACCCAAATACCAACTCTTATAAGCGTTTGGTAACGGGCTTTTAAGCACCGGGATTGTTGGCCCATTCCGCTAGTAAACGTTTCGCTTCCATTCGTATTCCGGCGGTGACTAGcc > 1:867694/1‑250 (MQ=255) gCACTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTc < 1:282301/201‑1 (MQ=255) tctactatatGTCTTTAAGCAAAGGCGAC‑AAAATATTTTCCAGGGGAATAAATATGCCGGTCTTTCCAAAACGCCACTTTTCTCCATCGCCGTTATTATAAACCACGCCAAGGCCTTAACCGCC‑TTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGTGACTAGCCCTAAAGc < 1:425139/245‑1 (MQ=255) cTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAac < 1:393612/104‑1 (MQ=255) cTGCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGGATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGGGACTAGCCCTaaaa > 1:741527/1‑250 (MQ=255) gCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTttat > 1:174134/1‑80 (MQ=255) gCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTa < 1:193072/204‑1 (MQ=255) gCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGTGACTAGCCCTAAAGc < 1:871535/250‑1 (MQ=255) gCAATATGTCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCC‑AAACGGCACTTTATTAC‑TCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCAtt > 1:633154/1‑219 (MQ=255) tCTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTTTTAAACACGCCAAAGCCTTAAACGCCTTTACCAAACCAAGTACCAACTCTTATAAGCGTTTTGTACCGGGCTTTGAAGCACCGGTATTGTTTGCCTATTCCGCTAGTAACCGTTCCGCTTACATTTGTATTCCGGCGGTGACTAGCCCTAAAGCCATTCGTAt > 1:45795/1‑251 (MQ=255) cTTTAAGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTGTTACATCGGCGGTATTATTAAAAACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCCTTGAAGCACCGGCATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGGGACTAGCCCTAAAGCCATTCGTAtt > 1:457299/1‑251 (MQ=255) aaGCAAAGACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGTGACTAGCCCTAAAGCCATTCGTATTGAAg < 1:857100/251‑1 (MQ=255) | TATTAATGGAAGAAATGGGTTTGGTCATCGAAGCGCACCACCATGAAGTGGCAACTGCAGGACAAAATGAAATTGCAACCAAATTCAACAGCCTCACTTTAAAAGCAGACGAAACCCAGATTTATAAATATATCGTACGTAATGTGGCATATGAACACGGCAAAACCGCTTGTTTTATGCCGAAACCGATTACTGGTGATAACGGTTCAGGTATGCACTGCAATATGTCTTTAAGCAAAAACGGCAAAAATATTTTCCAAGGGGATAAATATGCCGGTCTTTCCGAAACGGCACTTTATTACATCGGCGGTATTATTAAACACGCCAAAGCCTTAAACGCCTTTACCAACCCAAGTACCAACTCTTATAAGCGTTTGGTACCGGGCTTTGAAGCACCGGTATTGTTGGCCTATTCCGCTAGTAACCGTTCCGCTTCCATTCGTATTCCGGCGGTGACTAGCCCTAAAGCCATTCGTATTGAAG > 1/1102182‑1102664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |