Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,098,855 T→C intergenic (‑39302/‑33248) unknown ← / → unknown tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,098,8550TC100.0% 175.7 / NA 61intergenic (‑39302/‑33248)unknown/unknowntRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/32);  total (29/32)

CTTTAGTTAAACGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATTTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGGTTGTTGCTATAACAGAAT  >  1/1098608‑1099090
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                           
ctTTAGTTAAACGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCa                                                                                                                                                                                                                                          >  1:550571/1‑251 (MQ=255)
    aGTTAAACGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTTTTTTTGTGCCATCTCAGCtt                                                                                                                                                                                                                                      >  1:731955/1‑251 (MQ=255)
    aGTTAAACGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCtt                                                                                                                                                                                                                                      >  1:30440/1‑251 (MQ=255)
         aaCGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGa                                                                                                                                                                                                                                 <  1:771723/251‑1 (MQ=255)
                         aTTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTtgtg                                                                                                                                                                                                                 <  1:483157/251‑1 (MQ=255)
                           tCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGc                                                                                                                                                                                                                                        <  1:677983/226‑1 (MQ=255)
                           tCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTAGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCg                                                                                                                                                                                                               >  1:108252/1‑251 (MQ=255)
                                aGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGt                                                                                                                                                                                                          >  1:443879/1‑251 (MQ=255)
                                       cGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGATCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGc                                                                                                                                                                                                   <  1:643640/251‑1 (MQ=255)
                                                         cTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATa                                                                                                                                                                                  <  1:399916/250‑1 (MQ=255)
                                                           aCTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGt                                                                                                                                                                               >  1:539024/1‑251 (MQ=255)
                                                                   aTCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGtt                                                                                                                                                                                                                       >  1:859183/1‑203 (MQ=255)
                                                                   aTCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACgg                                                                                                                                                                       <  1:195362/251‑1 (MQ=255)
                                                                   aTCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACg                                                                                                                                                                        <  1:386909/250‑1 (MQ=255)
                                                                               cTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAg                                                                                                                                                           >  1:318019/1‑251 (MQ=255)
                                                                                        tGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGat                                                                                                                                                   <  1:262397/250‑1 (MQ=255)
                                                                                        tGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGat                                                                                                                                                   <  1:662897/250‑1 (MQ=255)
                                                                                         gCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATa                                                                                                                                                                                                      >  1:885921/1‑198 (MQ=255)
                                                                                          ccATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGatat                                                                                                                                                 <  1:337724/250‑1 (MQ=255)
                                                                                          ccATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATAtg                                                                                                                                                <  1:467460/251‑1 (MQ=255)
                                                                                           cATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATAtgt                                                                                                                                               <  1:698110/251‑1 (MQ=255)
                                                                                                     tCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCat                                                                                                                                     <  1:836764/251‑1 (MQ=255)
                                                                                                          gACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATAtttt                                                                                                                                >  1:12837/1‑251 (MQ=255)
                                                                                                          gACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATAtttt                                                                                                                                >  1:676132/1‑251 (MQ=255)
                                                                                                                       gCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGt                                                                                                                   >  1:552422/1‑251 (MQ=255)
                                                                                                                       gCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGt                                                                                                                   >  1:286884/1‑251 (MQ=255)
                                                                                                                        cTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGtt                                                                                                                  >  1:57501/1‑251 (MQ=255)
                                                                                                                               aTACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCtt                                                                                                                                                                                                                                      <  1:140777/128‑1 (MQ=255)
                                                                                                                                tACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACgg                                                                                                                                                                       >  1:571047/1‑190 (MQ=255)
                                                                                                                                     aCGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTAt                                                                                                                                                                             <  1:706998/179‑1 (MQ=255)
                                                                                                                                      cGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATAtgt                                                                                                                                               <  1:696032/208‑1 (MQ=255)
                                                                                                                                      cGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGtttt                                                                                                    >  1:533230/1‑251 (MQ=255)
                                                                                                                                      cGTTGAACAAGTTCCGCCTTTTTCTATTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGtttt                                                                                                    >  1:276516/1‑251 (MQ=255)
                                                                                                                                                   ccGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTGTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTGAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGAc                                                                                       <  1:210787/251‑1 (MQ=255)
                                                                                                                                                     gCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAAc                                                                                                                                                                         >  1:651683/1‑167 (MQ=255)
                                                                                                                                                     gCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACgg                                                                                                                                                                       >  1:231285/1‑169 (MQ=255)
                                                                                                                                                     gCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACgg                                                                                     >  1:40537/1‑251 (MQ=255)
                                                                                                                                                               gTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGat                                                                                                                                                   <  1:796841/179‑1 (MQ=255)
                                                                                                                                                               gTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGAttattt                                                                           >  1:489608/1‑251 (MQ=255)
                                                                                                                                                                  cTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATtatttatt                                                                        <  1:269077/251‑1 (MQ=255)
                                                                                                                                                                    aaTTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTg                                                                      <  1:9832/251‑1 (MQ=255)
                                                                                                                                                                      ttCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACgg                                                                                                                                                                       <  1:800952/152‑1 (MQ=255)
                                                                                                                                                                      ttCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGat                                                                                                                                                   <  1:559766/172‑1 (MQ=255)
                                                                                                                                                                             gCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGata                                                                                                                                                  >  1:32814/1‑166 (MQ=255)
                                                                                                                                                                              cTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAAc                                                            <  1:371759/251‑1 (MQ=255)
                                                                                                                                                                                                       ctctTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTc                                                                                                                                          >  1:204330/1‑148 (MQ=255)
                                                                                                                                                                                                         ctTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAActc                                                          >  1:78908/1‑226 (MQ=255)
                                                                                                                                                                                                                  gtgCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGat                                                                                                                                                   <  1:224736/128‑1 (MQ=255)
                                                                                                                                                                                                                  gtgCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCg                        >  1:173356/1‑251 (MQ=255)
                                                                                                                                                                                                                  gtgCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCg                        >  1:103884/1‑251 (MQ=255)
                                                                                                                                                                                                                  gtgCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAA‑TAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAAc                                                            <  1:164799/214‑1 (MQ=255)
                                                                                                                                                                                                                     cTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTgaga                                                                                           >  1:872805/1‑181 (MQ=255)
                                                                                                                                                                                                                      tATTGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATgg                    <  1:52817/251‑1 (MQ=255)
                                                                                                                                                                                                                         tGCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGgttg                 >  1:352352/1‑251 (MQ=255)
                                                                                                                                                                                                                          gCACGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATa                                                                                                                                                                                                      >  1:599764/1‑69 (MQ=255)
                                                                                                                                                                                                                             cGGGCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGGTTGTTGc             <  1:171923/251‑1 (MQ=255)
                                                                                                                                                                                                                               ggCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTg                                        <  1:647420/222‑1 (MQ=255)
                                                                                                                                                                                                                               ggCTTCCGCTTCTTTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATAcc                              <  1:260378/232‑1 (MQ=255)
                                                                                                                                                                                                                                        ttcttTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGGTTGTTGCTATAACAGAAt  <  1:400855/251‑1 (MQ=255)
                                                                                                                                                                                                                                        ttcttTTTGTGCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGGTTGTTGCTATAACAGAAt  <  1:677432/251‑1 (MQ=255)
                                                                                                                                                                                                                                                gtgCCATCTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAg                                                                                                                                                           <  1:360973/90‑1 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                           
CTTTAGTTAAACGTTGTTGGGTGGAATTCTTTAGTTTGACGGCCGCAAGTGCCTCTGCTACTTTACGATCTTCTTCTGCCTTCTGGCGTGCCATTTCTTGTTCACGGACTTGACGCTTAGCTTCTAAATACTCACGTTGAACAAGTTCCGCCTTTTTCTGTTCTAATTCTTGTGCTTTAATTTGGCTTTGTTGACGTTTCTCTTTTACTTGTGCTATTGCACGGGCTTCCGCTTCTTTTTGTGCCATTTCAGCTTTTTGACGGGCAAGTTTTTGTGCGGCAGTGATACGCTGAATTTCCGTTTGATAAGTATTAACGGATTCTTTTGCAGAATTAGATATGTTGTTCTGCATATTTTTTTTAATATTGGTTTTACTTTTTGTTTTAGCCTGAGAAGACGGTTGATTATTTATTTGAGCATTAAACTCTGACGCAAATGCCGGTTGATTAAATACCAATGCGATGGTTGTTGCTATAACAGAAT  >  1/1098608‑1099090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑