Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,097,221 G→A intergenic (‑37668/‑34882) unknown ← / → unknown tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,097,2210GA100.0% 197.9 / NA 74intergenic (‑37668/‑34882)unknown/unknowntRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (40/34);  total (40/34)

CTTTTAGCGCGGTAATTATTGGTATCACCACCGTGACCGTGCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTGTTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAGTGTGCTATCTAC  >  1/1096987‑1097465
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
cTTTTAGCGCGGTTATTATTGGTATCACCACCGTGACCGTGCATATCGCTATTAACGAATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTcc                                                                                                                                                                                                                                        >  1:571892/1‑249 (MQ=255)
cTTTTAGCGCGGTAATTATTGGTATCACCACCGTGACCGTGCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTcc                                                                                                                                                                                                                                        >  1:767363/1‑249 (MQ=255)
           gTAATTATTGGTATCACCACCGTGACCGTGCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGaa                                                                                                                                                                                                                            <  1:586367/250‑1 (MQ=255)
                               cgtgaccgtgCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGt                                                                                                                                                                                                         >  1:551514/1‑249 (MQ=255)
                                   accgtgCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGAt                                                                                                                                                                                                                                           >  1:430800/1‑211 (MQ=255)
                                   accgtgCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGcc                                                                                                                                                                                                    <  1:490295/250‑1 (MQ=255)
                                    ccgtgCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCca                                                                                                                                                                                                   >  1:758756/1‑250 (MQ=255)
                                                cTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAg                                                                                                                                                                                      >  1:816184/1‑251 (MQ=255)
                                                cTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAg                                                                                                                                                                                      >  1:455498/1‑251 (MQ=255)
                                                cTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAg                                                                                                                                                                                      >  1:188876/1‑251 (MQ=255)
                                                          aTTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTc                                                                                                                                                                                                                                                  >  1:609229/1‑181 (MQ=255)
                                                            tCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTAt                                                                                                                                                                          <  1:395975/251‑1 (MQ=255)
                                                            tCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTAt                                                                                                                                                                          <  1:100694/251‑1 (MQ=255)
                                                             cAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGAt                                                                                                                                                                                    >  1:556794/1‑240 (MQ=255)
                                                               aCCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTg                                                                                                                                                                        >  1:477383/1‑250 (MQ=255)
                                                                 ccAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCg                                                                                                                                                                     <  1:572711/251‑1 (MQ=255)
                                                                 ccAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCg                                                                                                                                                                     <  1:97618/251‑1 (MQ=255)
                                                                 ccAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCg                                                                                                                                                                     <  1:352337/251‑1 (MQ=255)
                                                                    aaCACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTTAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATg                                                                                                                                                                  <  1:437123/251‑1 (MQ=255)
                                                                            caAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATg                                                                                                                                                                  >  1:575870/1‑243 (MQ=255)
                                                                              agagTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGAttt                                                                                                                                                            >  1:851606/1‑247 (MQ=255)
                                                                                      gTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGTGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACt                                                                                                                                                                                               <  1:430204/204‑1 (MQ=255)
                                                                                          aaaCTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGt                                                                                                                                              <  1:96807/249‑1 (MQ=255)
                                                                                              ttGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAAcc                                                                                                                                        <  1:413362/251‑1 (MQ=255)
                                                                                                gTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACca                                                                                                                                       >  1:880952/1‑250 (MQ=255)
                                                                                                     gTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGAtt                                                                                                                                                             <  1:652170/223‑1 (MQ=255)
                                                                                                     gTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGaaa                                                                                                                                 >  1:370560/1‑251 (MQ=255)
                                                                                                        tAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATgg                                                                                                                              <  1:11571/251‑1 (MQ=255)
                                                                                                          aTTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTCCATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGtt                                                                                                                            <  1:475559/251‑1 (MQ=255)
                                                                                                                          cccGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGc                                                                                                                    >  1:17352/1‑243 (MQ=255)
                                                                                                                             ggAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGAt                                                                                                                                                                                                                                           <  1:762982/121‑1 (MQ=255)
                                                                                                                               aaaGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATg                                                                                                        <  1:163779/250‑1 (MQ=255)
                                                                                                                                  gATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGGTTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATggg                                                                                                      >  1:444071/1‑249 (MQ=255)
                                                                                                                                   aTCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGAt                                                                                                                                                                                    <  1:619595/170‑1 (MQ=255)
                                                                                                                                       aaaTTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTttc                                                                                               <  1:807271/251‑1 (MQ=255)
                                                                                                                                           ttAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCg                                                                                           <  1:866675/251‑1 (MQ=255)
                                                                                                                                           ttAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCg                                                                                           <  1:292331/251‑1 (MQ=255)
                                                                                                                                             aaTGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTg                                                                                         <  1:218787/251‑1 (MQ=255)
                                                                                                                                                gTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGc                                                                                                     >  1:736831/1‑236 (MQ=255)
                                                                                                                                                 tATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTgaga                                                                                      <  1:73087/250‑1 (MQ=255)
                                                                                                                                                  aTTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCg                                                                                           <  1:776330/244‑1 (MQ=255)
                                                                                                                                                               aCATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGtt                                                                                                                            <  1:819155/198‑1 (MQ=255)
                                                                                                                                                               aCATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGtt                                                                        >  1:428606/1‑250 (MQ=255)
                                                                                                                                                                cATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGAt                                                                                                                                                                                    >  1:821366/1‑141 (MQ=255)
                                                                                                                                                                cATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTc                                                                                                                                                           >  1:247711/1‑166 (MQ=255)
                                                                                                                                                                cATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATg                                                                                                        >  1:891311/1‑217 (MQ=255)
                                                                                                                                                                cATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTttctg                                                                                             >  1:573771/1‑227 (MQ=255)
                                                                                                                                                                cATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGtt                                                                        >  1:118935/1‑249 (MQ=255)
                                                                                                                                                                        gCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAg                                                               >  1:626244/1‑250 (MQ=255)
                                                                                                                                                                               cATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGcc                                                                                                                                                                                                    >  1:373597/1‑110 (MQ=255)
                                                                                                                                                                               cATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTc                                                        <  1:123073/250‑1 (MQ=255)
                                                                                                                                                                                        cGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAAcc                                                                                                                                        <  1:222973/161‑1 (MQ=255)
                                                                                                                                                                                        cGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCa                                              >  1:365624/1‑251 (MQ=255)
                                                                                                                                                                                           gaATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGtt                                                                                                                            <  1:875935/170‑1 (MQ=255)
                                                                                                                                                                                            aaTTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGc                                           <  1:473360/250‑1 (MQ=255)
                                                                                                                                                                                                      gggTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTa                                  >  1:512171/1‑249 (MQ=255)
                                                                                                                                                                                                      gggTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTa                                  >  1:820095/1‑249 (MQ=255)
                                                                                                                                                                                                       ggTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTAt                                                                                                                                                                          <  1:816169/112‑1 (MQ=255)
                                                                                                                                                                                                       ggTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTa                                  >  1:471105/1‑248 (MQ=255)
                                                                                                                                                                                                        gTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTa                                                                                                                                                                                              <  1:433065/91‑1 (MQ=255)
                                                                                                                                                                                                        gTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCAt                                                                                                                  >  1:437106/1‑167 (MQ=255)
                                                                                                                                                                                                        gTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTg                               <  1:543632/250‑1 (MQ=255)
                                                                                                                                                                                                        gTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTg                               >  1:300276/1‑250 (MQ=255)
                                                                                                                                                                                                        gTTATATATCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTg                               >  1:523954/1‑250 (MQ=255)
                                                                                                                                                                                                                tCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGa                                                                                                          >  1:126154/1‑167 (MQ=255)
                                                                                                                                                                                                                tCGTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTg                       >  1:214670/1‑250 (MQ=255)
                                                                                                                                                                                                                  gTTGGGGCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGct                             >  1:180176/1‑242 (MQ=255)
                                                                                                                                                                                                                       ggCTTGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTa               >  1:327465/1‑251 (MQ=255)
                                                                                                                                                                                                                          ttGTGGTGCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAgtg            >  1:635991/1‑251 (MQ=255)
                                                                                                                                                                                                                              ggtgCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTAt                                                                                                                                                                          <  1:790177/89‑1 (MQ=255)
                                                                                                                                                                                                                               gtgCTACTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGCGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAGTGTGCTa       >  1:433824/1‑251 (MQ=255)
                                                                                                                                                                                                                                    aCTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTAc                                 <  1:692448/220‑1 (MQ=255)
                                                                                                                                                                                                                                    aCTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAGTGTGCTATCTa   >  1:16232/1‑250 (MQ=255)
                                                                                                                                                                                                                                    aCTTCTATTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAGTGTGCTATCTAc  <  1:409221/251‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
CTTTTAGCGCGGTAATTATTGGTATCACCACCGTGACCGTGCATATCGCTATTAACGTATTCAACCCAAACACCACCAAGAGTGCGGTAGAAACTTGTTCTGTCTAATTTTCTGTCTAAGCGCCCGGAAAGATCTAAATTTAATGTATTCAAGATTGCTACATTGGAAGCGATCGCATTGGCAACGAGAATTTCATTTGGGTTATATATCGTTGGGGCTTGTGGTGCTACTTCTGTTTCCTCAGATTCCCTAACTTCCGAATTAGCGATAACCTCAGCGTCAGCCACACTAGGTTCAAGATTGGCATGTATTGCCGATGCGATTTCTGTAGTTAAACGTTTAACCACAGAAATGGTTTCTTCAGCATTCAGTTGATGGGCTGTTTCTTCGTGAGAAGCGACAACTTGTTCTACCGAAGCTTGTTCAGCTACTTCAGGCTGACTGTTACTGCTCTCCTGCGATTCTAGTGTGCTATCTAC  >  1/1096987‑1097465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑