Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,092,214 T→C intergenic (‑32661/‑39889) unknown ← / → unknown tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,092,2140TC100.0% 207.1 / NA 76intergenic (‑32661/‑39889)unknown/unknowntRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (30/46);  total (30/46)

GCCCGGTACCGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGTGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAAGTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGATTGTTGCAAGCCCATGTGT  >  1/1091969‑1092452
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                              
gCCCGGTACCGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAg                                                                                                                                                                                                                                            >  1:796126/1‑250 (MQ=255)
  ccGGTACCGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAg                                                                                                                                                                                                                                            >  1:128897/1‑248 (MQ=255)
  ccGGTACCGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTg                                                                                                                                                                                                                                         <  1:202049/251‑1 (MQ=255)
        ccGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGAtgttg                                                                                                                                                                                                                                   <  1:403404/251‑1 (MQ=255)
           tttGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATgttgtt                                                                                                                                                                                                                                 <  1:551164/250‑1 (MQ=255)
               tCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGt                                                                                                                                                                                                                            <  1:5123/251‑1 (MQ=255)
                    ggCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGAtg                                                                                                                                                                                                                                      <  1:73766/236‑1 (MQ=255)
                    ggCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTg                                                                                                                                                                                                                        >  1:463272/1‑250 (MQ=255)
                    ggCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTg                                                                                                                                                                                                                        >  1:329935/1‑250 (MQ=255)
                    ggCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCCTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGGTGTTTGAGtctgtt                                                                                                                                                                                                                       >  1:355177/1‑246 (MQ=255)
                                       tcttcAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAAt                                                                                                                                                                                                          >  1:300025/1‑245 (MQ=255)
                                             aaTACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGAtgt                                                                                                                                                                                                                                     >  1:496821/1‑212 (MQ=255)
                                                    ccTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAAttt                                                                                                                                                                                       <  1:790744/251‑1 (MQ=255)
                                                       cGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTAt                                                                                                                                                                                    <  1:381260/251‑1 (MQ=255)
                                                            cTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCGGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTAttgttg                                                                                                                                                                               <  1:660529/251‑1 (MQ=255)
                                                                 tcCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTaa                                                                                                                                                                          <  1:619288/251‑1 (MQ=255)
                                                                             cccAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTGTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAAc                                                                                                                                                               <  1:514969/250‑1 (MQ=255)
                                                                                 gTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAAt                                                                                                                                                                                                          <  1:290832/203‑1 (MQ=255)
                                                                                 gTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAAttt                                                                                                                                                                                       >  1:764329/1‑222 (MQ=255)
                                                                                 gTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCaaa                                                                                                                                                          >  1:31253/1‑251 (MQ=255)
                                                                                 gTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCaaa                                                                                                                                                          >  1:774135/1‑251 (MQ=255)
                                                                                 gTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCaaa                                                                                                                                                          >  1:414584/1‑251 (MQ=255)
                                                                                   aCTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTGATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGtat                                                                                                                                                                  <  1:589005/241‑1 (MQ=255)
                                                                                   aCTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAg                                                                                                                                                         >  1:335133/1‑250 (MQ=255)
                                                                                              aTAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAggg                                                                                                                                             <  1:621380/251‑1 (MQ=255)
                                                                                               tAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGt                                                                                                                                            >  1:680132/1‑251 (MQ=255)
                                                                                                 aTTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGa                                                                                                                                          >  1:165161/1‑251 (MQ=255)
                                                                                                 aTTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGa                                                                                                                                          >  1:812731/1‑251 (MQ=255)
                                                                                                  ttCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGAc                                                                                                                                         <  1:63403/251‑1 (MQ=255)
                                                                                                    cATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTAttgt                                                                                                                                                                                 <  1:263841/209‑1 (MQ=255)
                                                                                                    cATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACaa                                                                                                                                       <  1:461628/251‑1 (MQ=255)
                                                                                                      tttCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTTAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAata                                                                                                                                     <  1:227991/251‑1 (MQ=255)
                                                                                                      tttCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAata                                                                                                                                     <  1:881344/251‑1 (MQ=255)
                                                                                                          aCTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATTGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGGGCTGTTGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGTGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGaa                                                                                                                                 >  1:334599/1‑251 (MQ=255)
                                                                                                          aCTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGaa                                                                                                                                 >  1:137465/1‑251 (MQ=255)
                                                                                                          aCTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGGGACAATATGaa                                                                                                                                 >  1:828239/1‑251 (MQ=255)
                                                                                                                ttCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTaaac                                                                                                                           <  1:567240/251‑2 (MQ=255)
                                                                                                                ttCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTaaac                                                                                                                           <  1:716610/251‑2 (MQ=255)
                                                                                                                ttCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTaaac                                                                                                                           <  1:527107/251‑2 (MQ=255)
                                                                                                                 tCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTaaact                                                                                                                          <  1:348508/251‑3 (MQ=255)
                                                                                                                      ttCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGc                                                                                                                     <  1:316814/251‑1 (MQ=255)
                                                                                                                      ttCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGc                                                                                                                     <  1:727400/251‑1 (MQ=255)
                                                                                                                          gAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGc                                                                                                                     <  1:245905/247‑1 (MQ=255)
                                                                                                                                      gCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTc                                                                                                      <  1:472300/250‑1 (MQ=255)
                                                                                                                                            cGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGc                                                                                                                                                        <  1:223035/194‑1 (MQ=255)
                                                                                                                                              gTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCATAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGcc                                                                                                                    <  1:868065/228‑1 (MQ=255)
                                                                                                                                              gTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGCGTAACGCCGTATAACGc                                                                                                                                                             >  1:431950/1‑187 (MQ=255)
                                                                                                                                              gTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAg                                                                                              <  1:423928/250‑1 (MQ=255)
                                                                                                                                               ttAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGc                                                                                             <  1:207179/250‑1 (MQ=255)
                                                                                                                                               ttAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGc                                                                                             <  1:857517/250‑1 (MQ=255)
                                                                                                                                                             aaCCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACtcgatcga                                                                              >  1:696226/1‑251 (MQ=255)
                                                                                                                                                                     gATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAggg                                                                                                                                             <  1:686520/180‑1 (MQ=255)
                                                                                                                                                                         ttttGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAgtg                                                                  <  1:418443/251‑1 (MQ=255)
                                                                                                                                                                               tgcAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGc                                                            <  1:561356/251‑1 (MQ=255)
                                                                                                                                                                                       cGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTaaac                                                                                                                           <  1:90635/180‑2 (MQ=255)
                                                                                                                                                                                              cATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCa                                              >  1:472017/1‑250 (MQ=255)
                                                                                                                                                                                               aTTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCAcc                                            <  1:163211/251‑1 (MQ=255)
                                                                                                                                                                                                ttAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAata                                                                                                                                     <  1:830884/161‑1 (MQ=255)
                                                                                                                                                                                                ttAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCt                                           <  1:736702/251‑1 (MQ=255)
                                                                                                                                                                                                   gTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAggg                                                                                                                                             <  1:543717/150‑1 (MQ=255)
                                                                                                                                                                                                   gTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTGATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGc                                         >  1:440554/1‑250 (MQ=255)
                                                                                                                                                                                                           ccTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGc                                                                                                                     <  1:411598/166‑1 (MQ=255)
                                                                                                                                                                                                           ccTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACatgatg                                >  1:70151/1‑251 (MQ=255)
                                                                                                                                                                                                           ccTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACatgatg                                >  1:818342/1‑251 (MQ=255)
                                                                                                                                                                                                             ttGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGAtg                                                                                                                                                                                                                                      >  1:244583/1‑51 (MQ=255)
                                                                                                                                                                                                             ttGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTAttg                                                                                                                                                                                  <  1:140859/103‑1 (MQ=255)
                                                                                                                                                                                                             ttGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTa                              >  1:525730/1‑251 (MQ=255)
                                                                                                                                                                                                                aTAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAAt                           <  1:547176/251‑1 (MQ=255)
                                                                                                                                                                                                                         gAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACt                                                                                                                               >  1:466729/1‑142 (MQ=255)
                                                                                                                                                                                                                         gAATAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGAttg                  >  1:738203/1‑251 (MQ=255)
                                                                                                                                                                                                                          aaTAAATTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGAttgt                 <  1:85715/251‑1 (MQ=255)
                                                                                                                                                                                                                             aaaTTAATGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGAttgttg               >  1:24468/1‑250 (MQ=255)
                                                                                                                                                                                                                                  aaTGTCGTCTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAAt                           <  1:231225/233‑1 (MQ=255)
                                                                                                                                                                                                                                        gtcTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGATTGTTGCAAGCCCAtgtg   >  1:827319/1‑251 (MQ=255)
                                                                                                                                                                                                                                         tcTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGATTGTTGCAAGCCCATgtgt  <  1:583701/251‑1 (MQ=255)
                                                                                                                                                                                                                                         tcTTTCAGTAAGCGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAACTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGATTGTTGCAAGCCCATgtgt  <  1:725171/251‑1 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                              
GCCCGGTACCGTTTGTCTAAGGCTATAGCAATTTCATTTTCTTCAAATACTCCCTCGCCACTTTCTCCGGGCTTTCGCCCAGTACTTTAACTTGATAATTCATTTCACTCATTTCTTGTTCGGAAATACGATTGGCGAGGCGGTTAAGTGCGGTCAGAACCTGCGGATTTTTTGCTGCAAAATCGGCTTTCATTAGTGGCGCACCTTGATAGGCAGGGAATAAATTAATGTCGTCTTTCAGTAAGTGGAGCTGATGTTGTTTGAGTTCTGCGTCAGTAGAAAATGCTTCGATTAAATCAATTTTATTGTTGAGTAACGCCGTATAACGCAAAGCAGGTTCAAGGGTGACAATATGAACTAAAGTAATGCCTTGTGATTTTATTCCTTTATAGCCATCGACTCGATCGAGAAATTCCAGTGTGAAGCCGGCGCGAATGTCACCTGCCACATGATGTAAATCGCTGATTGTTGCAAGCCCATGTGT  >  1/1091969‑1092452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑