| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,079,679 | C→T | intergenic (‑20126/‑52424) | unknown ← / → unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,079,679 | 0 | C | T | 98.7% | 203.6 / NA | 76 | intergenic (‑20126/‑52424) | unknown/unknown | tRNA‑Ser‑GGA/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (32/43); total (32/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTATTATAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCCGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCCGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACTTTGCCGAAA > 1/1079439‑1079913 | gTATTATAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTgg > 1:445981/1‑251 (MQ=255)gTATTATAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTgg > 1:752074/1‑251 (MQ=255)gTATTATAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTgg > 1:873664/1‑251 (MQ=255) tattatAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTgg > 1:618136/1‑250 (MQ=255) ttatAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCgg < 1:530146/251‑1 (MQ=255) ttatAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCgg > 1:242476/1‑251 (MQ=255) ttatAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCgg > 1:289781/1‑251 (MQ=255) aaCTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGtt < 1:616242/251‑1 (MQ=255) cgcCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAatat < 1:211005/251‑1 (MQ=255) cgcCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAata < 1:707856/250‑1 (MQ=255) aaGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCac < 1:238084/251‑1 (MQ=255) cGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCaccgac < 1:371326/251‑1 (MQ=255) gAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTTTTaccgaacg > 1:159967/1‑246 (MQ=255) gTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAAATTCTGCAGCACTGGCGGTGtt < 1:592455/214‑1 (MQ=255) ttGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGgc < 1:235990/251‑1 (MQ=255) tGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGgct < 1:183111/251‑1 (MQ=255) gCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTgtagccgg > 1:611456/1‑241 (MQ=255) gCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCCACCGCCGCCGTTgcagcccg > 1:363739/1‑246 (MQ=255) cATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCAc > 1:74416/1‑217 (MQ=255) ttAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTc < 1:105697/251‑1 (MQ=255) acaacaacTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGttt < 1:719934/251‑1 (MQ=255) acaacTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTa < 1:396418/251‑1 (MQ=255) caacTAAAGGGAAAAGATTATAAGGCGATACGGTCGTGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCAc < 1:447567/206‑1 (MQ=255) acTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAACCCGCTGCTCCGTTTGTAccg > 1:57009/1‑251 (MQ=255) gggAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCCGtt > 1:265864/1‑251 (MQ=255) aGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTg < 1:269059/234‑1 (MQ=255) aTTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCac < 1:519892/198‑1 (MQ=255) aTTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGc < 1:359199/250‑1 (MQ=255) ttATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTTTACCGCCCGTTCAGCCGc > 1:405634/1‑249 (MQ=255) aaGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCac < 1:204674/193‑1 (MQ=255) tCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCCCTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGc < 1:481310/251‑1 (MQ=255) aTTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGaa < 1:185090/250‑1 (MQ=255) aTTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGaa > 1:846842/1‑250 (MQ=255) aTTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAAc < 1:169252/251‑1 (MQ=255) tttCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCa < 1:96406/251‑1 (MQ=255) gCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTAc > 1:153961/1‑192 (MQ=255) aTGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTTACTTTCTCACCGACCGCTGCCGTTTCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTTCGCCGCCACGGCAGAAACCGCAAACACCGAACCTAACACGaa > 1:737230/1‑251 (MQ=255) gCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCCACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACa > 1:339686/1‑251 (MQ=255) tGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGa < 1:550810/251‑1 (MQ=255) cTTCCAGCAACTGCTCCCCGGAGCTGAAATTACCGTGTTTTTCCCGATACTGCACCCCCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCGCTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCGGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGc < 1:662299/250‑1 (MQ=255) cTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCCTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGc > 1:521201/1‑250 (MQ=255) tCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCAc < 1:843402/131‑1 (MQ=255) tCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAg < 1:98025/242‑1 (MQ=255) cTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCACCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAAc > 1:442844/1‑232 (MQ=255) gCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCg > 1:319331/1‑107 (MQ=255) cccACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCAt < 1:468797/250‑1 (MQ=255) gcgcTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAata > 1:202863/1‑108 (MQ=255) gcgcTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGa > 1:741453/1‑237 (MQ=255) aaaTTACCGTGTTTTTCCCGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCCGCAGCACTGGCGGTGTTAATATTCACTTTCTCCCCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAg < 1:442659/250‑1 (MQ=255) aaaTTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAg < 1:47401/250‑1 (MQ=255) aaaTTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAg < 1:249682/250‑1 (MQ=255) aaaTTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAg < 1:380435/250‑1 (MQ=255) aaTTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTg < 1:602078/251‑1 (MQ=255) tCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGGTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGGTTCATTGCTTTCATAGGGATTCCTTTTCTGa > 1:307330/1‑250 (MQ=255) cACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAata > 1:672619/1‑86 (MQ=255) aTACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACCCCGAACCTAACACGAACAGCGAAGCCCAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAg > 1:392552/1‑251 (MQ=255) aTACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAAc < 1:727664/196‑1 (MQ=255) aTACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGGTTCATTGCTTTCATAGTGATTCCt > 1:869125/1‑238 (MQ=255) cTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAg < 1:466289/227‑1 (MQ=255) gCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGGTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTaaa > 1:585417/1‑251 (MQ=255) cccaccGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAaaac < 1:95623/250‑1 (MQ=255) ccgcttccgcttTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAaaacaaaa > 1:431931/1‑250 (MQ=255) gCACCGATGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAaaac < 1:297707/230‑1 (MQ=255) aTGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATAc < 1:559355/251‑1 (MQ=255) tGCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACt < 1:277347/251‑1 (MQ=255) gCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCt < 1:411047/187‑1 (MQ=255) gCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAaaac > 1:211190/1‑222 (MQ=255) gCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACtt > 1:896301/1‑251 (MQ=255) gCCTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACtt > 1:705/1‑251 (MQ=255) ccTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACtt < 1:328714/250‑1 (MQ=255) ccTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACtt < 1:408407/250‑1 (MQ=255) cTACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAg < 1:345451/172‑1 (MQ=255) tACAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACTTTGc < 1:831153/251‑1 (MQ=255) cAAGGGCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCCCTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATAc < 1:307317/244‑1 (MQ=255) ggCTTTTTGAATTTCTGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACTTTGCCGaaa < 1:720879/250‑1 (MQ=255) aaTTTCTGCAGCACTGGCGGTGTTAATATTCACTTTTTCACCGACCGCTGCCGTTGCAGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTTATAGTGATTCCTTTTCTGACTAAAGTTAaaacaaac > 1:458700/1‑208 (MQ=255) | GTATTATAACTGCGCCCAATAAAAAAGACGAGGAACATTGCCTCGTCTTGCATTAAAACAACAACTAAAGGGAAAAGATTATAAGGCGATACGGTCGCGATTTTTTTCTAAGGTCGCTTTGCCGATGCCCTGCACTTCCAGCAACTGCTCCACGGCGCTGAAATTACCGTGTTTTTCACGATACTGCACCACCGCTTCCGCTTTTTTCGCACCGATGCCTACAAGGGCTTTTTGAATTTCCGCAGCACTGGCGGTGTTAATATTCACTTTCTCACCGACCGCTGCCGTTGCCGCCGGCTGCTCCGTTTGTACCGCCGGTTCAGCCGCTTTTTCCGCCGCCACGGCAGAACCCGCAAACACCGAACCTAACACGAACAGCGAAGCCAAAAGATGTTTCATTGCTTTCATAGTGATTCCTTTTCTGACTAAAGTTAAAACAAACGTTGAATCAATCAACGGGCATACTTTGCCGAAA > 1/1079439‑1079913 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |